UniProtKB - Q5F4T5 (Q5F4T5_9CALI)
Protein
Submitted name:
Capsid protein
Gene
N/A
Organism
Norwalk virus
Status
Functioni
Sites
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Binding sitei | 299 | GalactoseCombined sources | 1 | |
Binding sitei | 381 | FucoseCombined sources | 1 | |
Binding sitei | 382 | N-acetyl-D-glucosamineCombined sources | 1 | |
Binding sitei | 385 | FucoseCombined sources | 1 | |
Binding sitei | 401 | GlucoseCombined sources | 1 | |
Binding sitei | 449 | N-acetyl-D-glucosamine; via carbonyl oxygenCombined sources | 1 | |
Binding sitei | 451 | Galactose; via amide nitrogenCombined sources | 1 | |
Binding sitei | 532 | FucoseCombined sources | 1 | |
Binding sitei | 532 | N-acetyl-D-glucosamine; via carbonyl oxygenCombined sources | 1 |
Protein family/group databases
UniLectini | Q5F4T5 |
Names & Taxonomyi
Protein namesi | Submitted name: Capsid proteinImported |
Organismi | Norwalk virusImported |
Taxonomic identifieri | 11983 [NCBI] |
Taxonomic lineagei | Viruses › Riboviria › Orthornavirae › Pisuviricota › Pisoniviricetes › Picornavirales › Caliciviridae › Norovirus |
Proteomesi |
|
Structurei
3D structure databases
SMRi | Q5F4T5 |
ModBasei | Search... |
PDBe-KBi | Search... |
Miscellaneous databases
EvolutionaryTracei | Q5F4T5 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 12 – 275 | Calici_coatInterPro annotationAdd BLAST | 264 | |
Domaini | 307 – 546 | Calici_coat_CInterPro annotationAdd BLAST | 240 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 355 – 356 | Fucose bindingCombined sources | 2 | |
Regioni | 400 – 401 | N-acetyl-D-glucosamine bindingCombined sources | 2 | |
Regioni | 451 – 452 | Fucose bindingCombined sources | 2 | |
Regioni | 530 – 534 | Galactose bindingCombined sources | 5 |
Family and domain databases
CDDi | cd00205, rhv_like, 1 hit |
Gene3Di | 2.60.120.20, 1 hit |
InterProi | View protein in InterPro IPR004005, Calicivirus_coat IPR013643, Calicivirus_coat_C IPR033703, Rhv-like IPR029053, Viral_coat |
Pfami | View protein in Pfam PF00915, Calici_coat, 1 hit PF08435, Calici_coat_C, 1 hit |
i Sequence
Sequence statusi: Complete.
Q5F4T5-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MKMASNDAAP SNDGAAGLVP ESNNEVMALE PVAGASLAAP VTGQTNIIDP
60 70 80 90 100
WIRMNFVQAP NGEFTVSPRN SPGEVLLNLE LGPELNPYLA HLSRMYNGYA
110 120 130 140 150
GGMEVQIMLA GNAFTAGKLI FAAVPPHFPI ENLSPPQITM FPHVIIDVRT
160 170 180 190 200
LEPVLLPMPD IRNSFFHFIQ RDEPKMRLVA MLYTPLRSNG SGDDVFTVSC
210 220 230 240 250
RVLTRPTPDF DFTYLVPPTV ESKSKPFTLP ILTLGELTNS RFPLPIDVLY
260 270 280 290 300
TNPNESAIVQ CQNGRCTLDG ELQGTTQLLP TGICAFRGKV TQQVQDEHRG
310 320 330 340 350
THWNMTVTNL NGTPFDPTED VPAPLGTPDF SGQIYGVISQ RNTNTVPGEG
360 370 380 390 400
NLPANRAHEA VIATYSPKFT PKLGNIQFST WETQDVSSGQ PTKFTPVGLA
410 420 430 440 450
SVDANSHFDQ WTLPSYSGAL TLNMNLAPSV APVFPGECLL FFRSFIPLKG
460 470 480 490 500
GYGNPAIDCL MPQEWVQHLY QESAPSLSDV ALVRYVNPET GRTLFEAKLH
510 520 530 540
RNGFLTVARN SAGPVVAPTN GYFRFDSWVN QFYTLAPMGN GSGRRRMQ
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF504671 Genomic RNA Translation: AAT12445.1 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AF504671 Genomic RNA Translation: AAT12445.1 |
3D structure databases
Select the link destinations: PDBei RCSB PDBi PDBji Links Updated | PDB entry | Method | Resolution (Å) | Chain | Positions | PDBsum |
3ONU | X-ray | 1.40 | A/B | 225-538 | [»] | |
3ONY | X-ray | 1.85 | A/B/C | 225-538 | [»] | |
3PA1 | X-ray | 1.48 | A/B | 224-538 | [»] | |
3PA2 | X-ray | 1.48 | A/B | 224-538 | [»] | |
3Q38 | X-ray | 1.28 | A/B | 224-538 | [»] | |
3Q39 | X-ray | 1.25 | A/B | 224-538 | [»] | |
3Q3A | X-ray | 1.40 | A/B | 224-538 | [»] | |
3Q6Q | X-ray | 1.43 | A/B | 224-538 | [»] | |
3Q6R | X-ray | 1.40 | A/B | 224-538 | [»] | |
3RY8 | X-ray | 1.40 | A/B | 225-538 | [»] | |
3V7A | X-ray | 3.30 | A/B | 224-538 | [»] | |
4X7E | X-ray | 2.11 | A/B | 224-538 | [»] | |
4X7F | X-ray | 1.70 | A/B | 224-538 | [»] | |
4Z4R | X-ray | 1.80 | A/B | 224-538 | [»] | |
4Z4S | X-ray | 1.80 | A/B | 224-538 | [»] | |
4Z4T | X-ray | 1.80 | A/B | 224-538 | [»] | |
4Z4U | X-ray | 1.89 | A/B | 224-538 | [»] | |
4Z4V | X-ray | 1.80 | A/B | 224-538 | [»] | |
4Z4W | X-ray | 1.80 | A/B | 224-538 | [»] | |
4Z4Y | X-ray | 1.80 | A/B | 224-538 | [»] | |
4Z4Z | X-ray | 1.80 | A/B | 224-538 | [»] | |
5BSX | X-ray | 1.78 | A/B | 224-538 | [»] | |
5BSY | X-ray | 1.60 | A/B | 224-538 | [»] | |
5HZA | X-ray | 1.35 | A/B | 224-538 | [»] | |
5HZB | X-ray | 1.55 | A/B | 224-538 | [»] | |
5O03 | X-ray | 2.19 | A/B | 224-538 | [»] | |
5O04 | X-ray | 2.30 | A/B | 224-538 | [»] | |
5O05 | X-ray | 2.00 | A/B | 224-538 | [»] | |
5OMM | X-ray | 1.70 | A/B | 224-538 | [»] | |
5OMN | X-ray | 2.68 | B | 224-538 | [»] | |
6GW1 | X-ray | 1.90 | A/B | 225-538 | [»] | |
6GW2 | X-ray | 2.05 | A/B | 225-538 | [»] | |
6GY9 | X-ray | 1.83 | A/B | 225-538 | [»] | |
SMRi | Q5F4T5 | |||||
ModBasei | Search... | |||||
PDBe-KBi | Search... |
Protein family/group databases
UniLectini | Q5F4T5 |
Protocols and materials databases
ABCDi | Q5F4T5, 10 sequenced antibodies |
Miscellaneous databases
EvolutionaryTracei | Q5F4T5 |
Family and domain databases
CDDi | cd00205, rhv_like, 1 hit |
Gene3Di | 2.60.120.20, 1 hit |
InterProi | View protein in InterPro IPR004005, Calicivirus_coat IPR013643, Calicivirus_coat_C IPR033703, Rhv-like IPR029053, Viral_coat |
Pfami | View protein in Pfam PF00915, Calici_coat, 1 hit PF08435, Calici_coat_C, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | Q5F4T5_9CALI | |
Accessioni | Q5F4T5Primary (citable) accession number: Q5F4T5 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | March 15, 2005 |
Last sequence update: | March 15, 2005 | |
Last modified: | October 7, 2020 | |
This is version 66 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |