UniProtKB - Q5F4T5 (Q5F4T5_9CALI)

>tr|Q5F4T5|Q5F4T5_9CALI Capsid protein OS=Norwalk virus OX=11983 PE=1 SV=1
MKMASNDAAPSNDGAAGLVPESNNEVMALEPVAGASLAAPVTGQTNIIDPWIRMNFVQAP
NGEFTVSPRNSPGEVLLNLELGPELNPYLAHLSRMYNGYAGGMEVQIMLAGNAFTAGKLI
FAAVPPHFPIENLSPPQITMFPHVIIDVRTLEPVLLPMPDIRNSFFHFIQRDEPKMRLVA
MLYTPLRSNGSGDDVFTVSCRVLTRPTPDFDFTYLVPPTVESKSKPFTLPILTLGELTNS
RFPLPIDVLYTNPNESAIVQCQNGRCTLDGELQGTTQLLPTGICAFRGKVTQQVQDEHRG
THWNMTVTNLNGTPFDPTEDVPAPLGTPDFSGQIYGVISQRNTNTVPGEGNLPANRAHEA
VIATYSPKFTPKLGNIQFSTWETQDVSSGQPTKFTPVGLASVDANSHFDQWTLPSYSGAL
TLNMNLAPSVAPVFPGECLLFFRSFIPLKGGYGNPAIDCLMPQEWVQHLYQESAPSLSDV
ALVRYVNPETGRTLFEAKLHRNGFLTVARNSAGPVVAPTNGYFRFDSWVNQFYTLAPMGN
GSGRRRMQ

Entry version 60 (08 May 2019)
Sequence version 1 (15 Mar 2005)
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Protein

Submitted name:

Capsid protein

Gene

N/A

Organism

Norwalk virus

Status

Unreviewed-Annotation score: -Experimental evidence at protein levelⁱ

Functionⁱ

Sites

Feature key	Position(s)	DescriptionActions	Length
Binding siteⁱ	299	GalactoseCombined sources	1
Binding siteⁱ	381	FucoseCombined sources	1
Binding siteⁱ	382	N-acetyl-D-glucosamineCombined sources	1
Binding siteⁱ	385	FucoseCombined sources	1
Binding siteⁱ	401	GlucoseCombined sources	1
Binding siteⁱ	449	N-acetyl-D-glucosamine; via carbonyl oxygenCombined sources	1
Binding siteⁱ	451	Galactose; via amide nitrogenCombined sources	1
Binding siteⁱ	532	FucoseCombined sources	1
Binding siteⁱ	532	N-acetyl-D-glucosamine; via carbonyl oxygenCombined sources	1

Protein family/group databases

UniLectinⁱ	Q5F4T5

UniLectinⁱ

Q5F4T5

Names & Taxonomyⁱ

Protein namesⁱ	Submitted name: Capsid proteinImported
Organismⁱ	Norwalk virusImported
Taxonomic identifierⁱ	11983 [NCBI]
Taxonomic lineageⁱ	Viruses › ssRNA viruses › ssRNA positive-strand viruses, no DNA stage › Caliciviridae › Norovirus
Proteomesⁱ	UP000157806 Componentⁱ: Genome

Structureⁱ

3D structure databases

Select the link destinations: Protein Data Bank Europe More...PDBeⁱ Protein Data Bank RCSB More...RCSB PDBⁱ Protein Data Bank Japan More...PDBjⁱ Links Updated	PDB entry	Method	Resolution (Å)	Chain	Positions	PDBsum
	3ONU	X-ray	1.40	A/B	225-538	[»]
	3ONY	X-ray	1.85	A/B/C	225-538	[»]
	3PA1	X-ray	1.48	A/B	224-538	[»]
	3PA2	X-ray	1.48	A/B	224-538	[»]
	3Q38	X-ray	1.28	A/B	224-538	[»]
	3Q39	X-ray	1.25	A/B	224-538	[»]
	3Q3A	X-ray	1.40	A/B	224-538	[»]
	3Q6Q	X-ray	1.43	A/B	224-538	[»]
	3Q6R	X-ray	1.40	A/B	224-538	[»]
	3RY8	X-ray	1.40	A/B	225-538	[»]
	3V7A	X-ray	3.30	A/B	224-538	[»]
	4X7E	X-ray	2.11	A/B	224-538	[»]
	4X7F	X-ray	1.70	A/B	224-538	[»]
	4Z4R	X-ray	1.80	A/B	224-538	[»]
	4Z4S	X-ray	1.80	A/B	224-538	[»]
	4Z4T	X-ray	1.80	A/B	224-538	[»]
	4Z4U	X-ray	1.89	A/B	224-538	[»]
	4Z4V	X-ray	1.80	A/B	224-538	[»]
	4Z4W	X-ray	1.80	A/B	224-538	[»]
	4Z4Y	X-ray	1.80	A/B	224-538	[»]
	4Z4Z	X-ray	1.80	A/B	224-538	[»]
	5BSX	X-ray	1.78	A/B	224-538	[»]
	5BSY	X-ray	1.60	A/B	224-538	[»]
	5HZA	X-ray	1.35	A/B	224-538	[»]
	5HZB	X-ray	1.55	A/B	224-538	[»]
	5O03	X-ray	2.19	A/B	224-538	[»]
	5O04	X-ray	2.30	A/B	224-538	[»]
	5O05	X-ray	2.00	A/B	224-538	[»]
	5OMM	X-ray	1.70	A/B	224-538	[»]
	5OMN	X-ray	2.68	B	224-538	[»]
	6GW1	X-ray	1.90	A/B	225-538	[»]
	6GW2	X-ray	2.05	A/B	225-538	[»]
	6GY9	X-ray	1.83	A/B	225-538	[»]
SMRⁱ	Q5F4T5
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Miscellaneous databases

EvolutionaryTraceⁱ	Q5F4T5

EvolutionaryTraceⁱ

Q5F4T5

Family & Domainsⁱ

Domains and Repeats

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Domainⁱ	12 – 275	Calici_coatInterPro annotationAdd BLAST		264
Domainⁱ	307 – 546	Calici_coat_CInterPro annotationAdd BLAST		240

Region

Feature key	Position(s)	DescriptionActions	Length
Regionⁱ	355 – 356	Fucose bindingCombined sources	2
Regionⁱ	400 – 401	N-acetyl-D-glucosamine bindingCombined sources	2
Regionⁱ	451 – 452	Fucose bindingCombined sources	2
Regionⁱ	530 – 534	Galactose bindingCombined sources	5

Family and domain databases

Conserved Domains Database More...CDDⁱ	cd00205 rhv_like, 1 hit
Gene3Dⁱ	2.60.120.20, 1 hit
InterProⁱ	View protein in InterPro IPR004005 Calicivirus_coat IPR013643 Calicivirus_coat_C IPR033703 Rhv-like IPR029053 Viral_coat
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF00915 Calici_coat, 1 hit PF08435 Calici_coat_C, 1 hit

Sequenceⁱ

Sequence statusⁱ: Complete.

Q5F4T5-1 [UniParc]FASTA Add to basket

« Hide

        10         20         30         40         50
MKMASNDAAP SNDGAAGLVP ESNNEVMALE PVAGASLAAP VTGQTNIIDP 
        60         70         80         90        100
WIRMNFVQAP NGEFTVSPRN SPGEVLLNLE LGPELNPYLA HLSRMYNGYA 
       110        120        130        140        150
GGMEVQIMLA GNAFTAGKLI FAAVPPHFPI ENLSPPQITM FPHVIIDVRT 
       160        170        180        190        200
LEPVLLPMPD IRNSFFHFIQ RDEPKMRLVA MLYTPLRSNG SGDDVFTVSC 
       210        220        230        240        250
RVLTRPTPDF DFTYLVPPTV ESKSKPFTLP ILTLGELTNS RFPLPIDVLY 
       260        270        280        290        300
TNPNESAIVQ CQNGRCTLDG ELQGTTQLLP TGICAFRGKV TQQVQDEHRG 
       310        320        330        340        350
THWNMTVTNL NGTPFDPTED VPAPLGTPDF SGQIYGVISQ RNTNTVPGEG 
       360        370        380        390        400
NLPANRAHEA VIATYSPKFT PKLGNIQFST WETQDVSSGQ PTKFTPVGLA 
       410        420        430        440        450
SVDANSHFDQ WTLPSYSGAL TLNMNLAPSV APVFPGECLL FFRSFIPLKG 
       460        470        480        490        500
GYGNPAIDCL MPQEWVQHLY QESAPSLSDV ALVRYVNPET GRTLFEAKLH 
       510        520        530        540 
RNGFLTVARN SAGPVVAPTN GYFRFDSWVN QFYTLAPMGN GSGRRRMQ

Length:548

Mass (Da):59,900

Last modified:March 15, 2005 - v1

Checksum:ⁱFDB134B87D09A39B

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AF504671 Genomic RNA Translation: AAT12445.1

Select the link destinations:
EMBLⁱ
GenBankⁱ
DDBJⁱ

Links Updated

AF504671 Genomic RNA Translation: AAT12445.1

Protein	Similar proteins		Species	Score	Length	Source
Q5F4T5	Capsid protein		Human calicivirus NLV/Erfurt/546/00/DE		548	UniRef90_Q5F4T5
Capsid protein (Fragment)		Norovirus Hu/Chiba/010006/2001/JP		79
VP1, capsid protein (Fragment)		Norovirus Hu/GII/OC02050/2002/JP		92
Major capsid protein (Fragment)		Norovirus Hu/GII.10/NZ14608/2014/NZ		88
Capsid protein (Fragment)		Norovirus Hu/GII.10/79/2009/BFA		95
+40

Protein	Similar proteins		Species	Score	Length	Source
Q5F4T5	Capsid protein		LORDV		539	UniRef50_P54635
VP1		Norovirus Hu/GII.4/Hokkaido1/2009/JP		541
Capsid protein (Fragment)		Norovirus Hu/GII.4a/H765/Hillel Yaffe Hospital/ISR/2010		81
Major capsid protein VP1 (Fragment)		Norovirus Hu/GGII.4/ASPB05/2010/10_01739/Jan2010/SP		81
Capsid protein (Fragment)		Norovirus Hu/GII.4a/C146/Carmel Hospital/ISR/2008		81
+18056

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AF504671 Genomic RNA Translation: AAT12445.1

Select the link destinations:
EMBLⁱ
GenBankⁱ
DDBJⁱ

Links Updated

AF504671 Genomic RNA Translation: AAT12445.1

3D structure databases

Select the link destinations: PDBeⁱ RCSB PDBⁱ PDBjⁱ Links Updated	PDB entry	Method	Resolution (Å)	Chain	Positions	PDBsum
	3ONU	X-ray	1.40	A/B	225-538	[»]
	3ONY	X-ray	1.85	A/B/C	225-538	[»]
	3PA1	X-ray	1.48	A/B	224-538	[»]
	3PA2	X-ray	1.48	A/B	224-538	[»]
	3Q38	X-ray	1.28	A/B	224-538	[»]
	3Q39	X-ray	1.25	A/B	224-538	[»]
	3Q3A	X-ray	1.40	A/B	224-538	[»]
	3Q6Q	X-ray	1.43	A/B	224-538	[»]
	3Q6R	X-ray	1.40	A/B	224-538	[»]
	3RY8	X-ray	1.40	A/B	225-538	[»]
	3V7A	X-ray	3.30	A/B	224-538	[»]
	4X7E	X-ray	2.11	A/B	224-538	[»]
	4X7F	X-ray	1.70	A/B	224-538	[»]
	4Z4R	X-ray	1.80	A/B	224-538	[»]
	4Z4S	X-ray	1.80	A/B	224-538	[»]
	4Z4T	X-ray	1.80	A/B	224-538	[»]
	4Z4U	X-ray	1.89	A/B	224-538	[»]
	4Z4V	X-ray	1.80	A/B	224-538	[»]
	4Z4W	X-ray	1.80	A/B	224-538	[»]
	4Z4Y	X-ray	1.80	A/B	224-538	[»]
	4Z4Z	X-ray	1.80	A/B	224-538	[»]
	5BSX	X-ray	1.78	A/B	224-538	[»]
	5BSY	X-ray	1.60	A/B	224-538	[»]
	5HZA	X-ray	1.35	A/B	224-538	[»]
	5HZB	X-ray	1.55	A/B	224-538	[»]
	5O03	X-ray	2.19	A/B	224-538	[»]
	5O04	X-ray	2.30	A/B	224-538	[»]
	5O05	X-ray	2.00	A/B	224-538	[»]
	5OMM	X-ray	1.70	A/B	224-538	[»]
	5OMN	X-ray	2.68	B	224-538	[»]
	6GW1	X-ray	1.90	A/B	225-538	[»]
	6GW2	X-ray	2.05	A/B	225-538	[»]
	6GY9	X-ray	1.83	A/B	225-538	[»]
SMRⁱ	Q5F4T5
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein family/group databases

UniLectinⁱ	Q5F4T5

UniLectinⁱ

Q5F4T5

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Miscellaneous databases

EvolutionaryTraceⁱ	Q5F4T5

EvolutionaryTraceⁱ

Q5F4T5

Family and domain databases

CDDⁱ	cd00205 rhv_like, 1 hit
Gene3Dⁱ	2.60.120.20, 1 hit
InterProⁱ	View protein in InterPro IPR004005 Calicivirus_coat IPR013643 Calicivirus_coat_C IPR033703 Rhv-like IPR029053 Viral_coat
Pfamⁱ	View protein in Pfam PF00915 Calici_coat, 1 hit PF08435 Calici_coat_C, 1 hit
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	Q5F4T5_9CALI
Accessionⁱ	Q5F4T5Primary (citable) accession number: Q5F4T5
Entry historyⁱ	Integrated into UniProtKB/TrEMBL:	March 15, 2005
	Last sequence update:	March 15, 2005
	Last modified:	May 8, 2019
	This is version 60 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Unreviewed (UniProtKB/TrEMBL)

Miscellaneousⁱ

Keywords - Technical termⁱ

3D-structureCombined sources, Complete proteomeImported

UniProtKB - Q5F4T5 (Q5F4T5_9CALI)

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Capsid protein

Select a section on the left to see content.

Functionⁱ

Sites

Protein family/group databases

Names & Taxonomyⁱ

Structureⁱ

3D structure databases

Miscellaneous databases

Family & Domainsⁱ

Domains and Repeats

Region

Family and domain databases

Sequenceⁱ

Sequence databases

Similar proteinsⁱ

Cross-referencesⁱ

Sequence databases

3D structure databases

Protein family/group databases

Protocols and materials databases

Miscellaneous databases

Family and domain databases

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ

UniProt is an ELIXIR core data resource

UniProtKB

UniParc

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UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - Q5F4T5 (Q5F4T5_9CALI)

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Capsid protein

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<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Sites

Protein family/group databases

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Miscellaneous databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Region

Family and domain databases

Sequence databases

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein family/group databases

Protocols and materials databases

Miscellaneous databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

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Functionⁱ

Names & Taxonomyⁱ

Structureⁱ

Family & Domainsⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ