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Protein
Submitted name:

Uncharacterized protein

Gene

NUP50

Organism
Gallus gallus (Chicken)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-GGA-159236 Transport of Mature mRNA derived from an Intron-Containing Transcript
R-GGA-191859 snRNP Assembly
R-GGA-3108214 SUMOylation of DNA damage response and repair proteins
R-GGA-3301854 Nuclear Pore Complex (NPC) Disassembly
R-GGA-4551638 SUMOylation of chromatin organization proteins
R-GGA-4615885 SUMOylation of DNA replication proteins
R-GGA-5578749 Transcriptional regulation by small RNAs

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:NUP50Imported
ORF Names:RCJMB04_2i13Imported
OrganismiGallus gallus (Chicken)Imported
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSGALG00000014222

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000022956

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini335 – 468RanBD1InterPro annotationAdd BLAST134

Phylogenomic databases

eggNOGiKOG2724 Eukaryota
ENOG410YPHB LUCA
GeneTreeiENSGT00440000035348
HOGENOMiHOG000007919
HOVERGENiHBG052697
KOiK14295
OMAiTFLFHGN
OrthoDBiEOG091G0HML
TreeFamiTF106504

Family and domain databases

Gene3Di2.30.29.30, 1 hit
InterProiView protein in InterPro
IPR015007 NUP2/50/61
IPR011993 PH-like_dom_sf
IPR000156 Ran_bind_dom
PfamiView protein in Pfam
PF08911 NUP50, 1 hit
PF00638 Ran_BP1, 1 hit
SMARTiView protein in SMART
SM00160 RanBD, 1 hit
PROSITEiView protein in PROSITE
PS50196 RANBD1, 1 hit

Sequencei

Sequence statusi: Complete.

Q5F473-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKRIAEKEL TDRNWDQEDE AEEVGTFSVA SEEVLKNRAI KKAKRQNVAS
60 70 80 90 100
EPESRGAFKG FKGFVLPSGK EGGGFSGFGN GAGIKPLEGL SNGNSSIFST
110 120 130 140 150
PFSGLKTTSE TKSAFGSPMS NGPTTTTFTE KAAASPKANG GSQPSSSGYT
160 170 180 190 200
QSKVCSSSVY HKQLAALNCS VRDWIVKHVN TNPLCDLTPI FRDYEKYLAT
210 220 230 240 250
IEQQHGNSSD SGSENESNKT PGTQSASTFG NSKLQQGSTF LFNNKTEDAS
260 270 280 290 300
DKKTEAASEK RDPSIGATST VSFNIGKSGH SSGLSSFGSG TRSSFSFSPG
310 320 330 340 350
NPGLFGKDAN QAKSATAVST NALEAQTESG NNDDKGGEEE EEEPPKVIVN
360 370 380 390 400
EIKEDDAFYS KKCKLFYKKD NEFKEKGVGT LHLKPAGNEK TQLLVRADTN
410 420 430 440 450
LGNILLNVLI PPKMPCTRTG KNNVLIVCVP NPPIDENNPT VPVTMLIRVK
460
TSEDADELHK ILLEKKEA
Length:468
Mass (Da):50,108
Last modified:March 15, 2005 - v1
Checksum:iA0744E801A9D5B3F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AADN04000045 Genomic DNA No translation available.
AJ851427 mRNA Translation: CAH65061.1
RefSeqiNP_001012559.1, NM_001012541.1
UniGeneiGga.16654

Genome annotation databases

EnsembliENSGALT00000022998; ENSGALP00000022956; ENSGALG00000014222
GeneIDi418240
KEGGigga:418240

Similar proteinsi

Entry informationi

Entry nameiQ5F473_CHICK
AccessioniPrimary (citable) accession number: Q5F473
Entry historyiIntegrated into UniProtKB/TrEMBL: March 15, 2005
Last sequence update: March 15, 2005
Last modified: April 25, 2018
This is version 100 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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