UniProtKB - Q5DU56 (NLRC3_MOUSE)
Protein NLRC3
Nlrc3
Functioni
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Nucleotide bindingi | 144 – 151 | ATPPROSITE-ProRule annotation | 8 |
GO - Molecular functioni
- ATP binding Source: UniProtKB-KW
- phosphatidylinositol 3-kinase regulatory subunit binding Source: UniProtKB
GO - Biological processi
- I-kappaB kinase/NF-kappaB signaling Source: UniProtKB
- intracellular signal transduction Source: GO_Central
- negative regulation of cytokine production involved in inflammatory response Source: UniProtKB
- negative regulation of epithelial cell proliferation Source: UniProtKB
- negative regulation of fibroblast proliferation Source: UniProtKB
- negative regulation of I-kappaB kinase/NF-kappaB signaling Source: MGI
- negative regulation of inflammatory response Source: UniProtKB
- negative regulation of innate immune response Source: UniProtKB
- negative regulation of interferon-alpha production Source: UniProtKB
- negative regulation of interferon-beta production Source: UniProtKB
- negative regulation of interleukin-12 production Source: CACAO
- negative regulation of interleukin-1 beta production Source: CACAO
- negative regulation of interleukin-6 production Source: UniProtKB
- negative regulation of NF-kappaB transcription factor activity Source: UniProtKB
- negative regulation of NIK/NF-kappaB signaling Source: UniProtKB
- negative regulation of NLRP3 inflammasome complex assembly Source: UniProtKB
- negative regulation of phosphatidylinositol 3-kinase signaling Source: UniProtKB
- negative regulation of tumor necrosis factor production Source: CACAO
- regulation of protein ubiquitination Source: MGI
- response to lipopolysaccharide Source: MGI
- T cell activation Source: UniProtKB
Keywordsi
Ligand | ATP-binding, Nucleotide-binding |
Names & Taxonomyi
Protein namesi | Recommended name: Protein NLRC3 |
Gene namesi | Name:Nlrc3 |
Organismi | Mus musculus (Mouse) |
Taxonomic identifieri | 10090 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus |
Proteomesi |
|
Organism-specific databases
MGIi | MGI:2444070, Nlrc3 |
Subcellular locationi
Other locations
- Cytoplasm By similarity
Cytoskeleton
- centriolar satellite Source: MGI
Cytosol
- cytosol Source: MGI
Other locations
- cytoplasm Source: UniProtKB
- intracellular membrane-bounded organelle Source: MGI
- perinuclear region of cytoplasm Source: UniProtKB
Keywords - Cellular componenti
CytoplasmPathology & Biotechi
Disruption phenotypei
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000296188 | 1 – 1064 | Protein NLRC3Add BLAST | 1064 |
Proteomic databases
EPDi | Q5DU56 |
PaxDbi | Q5DU56 |
PRIDEi | Q5DU56 |
PTM databases
PhosphoSitePlusi | Q5DU56 |
Expressioni
Tissue specificityi
Gene expression databases
Bgeei | ENSMUSG00000049871, Expressed in lymph node and 135 other tissues |
ExpressionAtlasi | Q5DU56, baseline and differential |
Genevisiblei | Q5DU56, MM |
Interactioni
Subunit structurei
Directly interacts (via CARD) with TMEM173/STING; this interaction reduces TMEM173 trafficking to the perinuclear region in response to interferon stimulatory DNA.
Also interacts, but to a lesser extent, with TBK1 (PubMed:24560620).
Interacts with TRAF6; this interaction results in decreased TRAF6 'Lys-63'-linked polyubiquitination, but leaves 'Lys-48'-linked chains unchanged, promoting TRAF6 protein degradation (By similarity).
Interacts with PIK3R1/PIK3R2; this interaction disrupts the association between PIK3R1/PIK3R2 and the p110 catalytic subunit PIK3CA/PIK3CB/PIK3CD and reduces PIK3R1/PIK3R2 activation (PubMed:27951586). Weakly interacts with PYCARD/ASC.
Interacts with CASP1 and CASP5 (By similarity).
By similarity2 PublicationsGO - Molecular functioni
- phosphatidylinositol 3-kinase regulatory subunit binding Source: UniProtKB
Protein-protein interaction databases
STRINGi | 10090.ENSMUSP00000137628 |
Miscellaneous databases
RNActi | Q5DU56, protein |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 138 – 459 | NACHTPROSITE-ProRule annotationAdd BLAST | 322 | |
Repeati | 338 – 362 | LRR 1Add BLAST | 25 | |
Repeati | 570 – 593 | LRR 2Add BLAST | 24 | |
Repeati | 632 – 662 | LRR 3Add BLAST | 31 | |
Repeati | 664 – 687 | LRR 4Add BLAST | 24 | |
Repeati | 692 – 715 | LRR 5Add BLAST | 24 | |
Repeati | 720 – 743 | LRR 6Add BLAST | 24 | |
Repeati | 748 – 771 | LRR 7Add BLAST | 24 | |
Repeati | 776 – 799 | LRR 8Add BLAST | 24 | |
Repeati | 804 – 827 | LRR 9Add BLAST | 24 | |
Repeati | 832 – 855 | LRR 10Add BLAST | 24 | |
Repeati | 860 – 883 | LRR 11Add BLAST | 24 | |
Repeati | 888 – 911 | LRR 12Add BLAST | 24 | |
Repeati | 916 – 939 | LRR 13Add BLAST | 24 | |
Repeati | 972 – 995 | LRR 14Add BLAST | 24 | |
Repeati | 1000 – 1022 | LRR 15Add BLAST | 23 | |
Repeati | 1028 – 1051 | LRR 16Add BLAST | 24 |
Domaini
Sequence similaritiesi
Keywords - Domaini
Leucine-rich repeat, RepeatPhylogenomic databases
eggNOGi | KOG4308, Eukaryota |
GeneTreei | ENSGT00940000159861 |
HOGENOMi | CLU_017147_4_1_1 |
InParanoidi | Q5DU56 |
OrthoDBi | 259987at2759 |
PhylomeDBi | Q5DU56 |
Family and domain databases
Gene3Di | 3.80.10.10, 4 hits |
InterProi | View protein in InterPro IPR001611, Leu-rich_rpt IPR032675, LRR_dom_sf IPR007111, NACHT_NTPase IPR041267, NLRP_HD2 IPR041075, NOD2_WH IPR027417, P-loop_NTPase |
Pfami | View protein in Pfam PF13516, LRR_6, 9 hits PF05729, NACHT, 1 hit PF17776, NLRC4_HD2, 1 hit PF17779, NOD2_WH, 1 hit |
SUPFAMi | SSF52540, SSF52540, 1 hit |
PROSITEi | View protein in PROSITE PS50837, NACHT, 1 hit |
s (5+)i Sequence
Sequence statusi: Complete.
This entry describes 5 produced by isoformsialternative splicing. AlignAdd to basketThis entry has 5 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MRRRYSHDPP GSFRETKVFG FRGEYGCKAL VDLLAGKGSQ LLQVRDKMPD
60 70 80 90 100
SPLGSQSNES RIPKHSEALL SRVGNDPELG SPSHRLASLM LVEGLTDLQL
110 120 130 140 150
KEHDFTQVEA TRGVWHPARV ITLDRLFLPL SRVSIPPRVS LTIGVAGVGK
160 170 180 190 200
TTLVRHFVHC WARGQVGKGF SRVLPLTFRD LNTYEKLSAD RLIQSIFSSI
210 220 230 240 250
GEASLVATAP DRVLLVLDGL DECKTPLEFS NTMACSDPKK EIQVDHLITN
260 270 280 290 300
IIRGNLFPEI SVWITSRPSA AGQIPGGLVD RMTEIRGLTE EEIKVCLEQM
310 320 330 340 350
FPEEQNLLGQ VLSQVQANRA LYLMCTVPAF CRLTGLALGH LYRTRLAVQD
360 370 380 390 400
IELPLPQTLC ELYSWYFRMA LGGEGQDKEK VSPRIKQVTQ GARKMVGTLG
410 420 430 440 450
RLAFHGLVKK KYVFYEQDMK AFGVDLALLQ NTLCSCLLQR EETLASSVAY
460 470 480 490 500
CFIHLSLQEF VAATYYYSAS KRAIFDLFTE SGMSWPRLGF LAHFRCAAQR
510 520 530 540 550
ATQAKDGRLD VFLRFLSGLL SPRVNTLLAG SLLSQGEHQS YRDQVAEVLQ
560 570 580 590 600
GFLHPDAAVC ARAINVLYCL SELRHTELAC SVEEAMRSGT LAGMTSPSHR
610 620 630 640 650
TALAYLLQMS DICSPEADFS LCLSQHVLQS LLPQLLYCQS LRLDNNQFQD
660 670 680 690 700
PVMELLGSVL SGKDCRIRKI SLAENQIGNK GAKALARSLL VNRSLITLDL
710 720 730 740 750
RSNSIGPPGA KALADALKIN RTLTSLSLQS NVIKDDGVMC VAEALVSNQT
760 770 780 790 800
ISMLQLQKNL IGLIGAQQMA DALKQNRSLK ALMFSSNTIG DRGAIALAEA
810 820 830 840 850
LKVNQILENL DLQSNSISDM GVTVLMRALC SNQTLSSLNL RENSISPEGA
860 870 880 890 900
QALTQALCRN NTLKHLDLTA NLLHDRGAQA IAVAVGENHS LTHLHLQWNF
910 920 930 940 950
IQAGAARALG QALQLNRTLT TLDLQENAIG DEGASSVAGA LKVNTTLIAL
960 970 980 990 1000
YLQVASIGSQ GAQALGEALT VNRTLEILDL RGNDVGAAGA KALANALKLN
1010 1020 1030 1040 1050
SSLRRLNLQE NSLGMDGAIF VASALSENHG LHHINLQGNP IGESAARMIS
1060
EAIKTNAPTC TVEI
Computationally mapped potential isoform sequencesi
There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketJ3QQ49 | J3QQ49_MOUSE | Protein NLRC3 | Nlrc3 | 1,102 | Annotation score: | ||
A0A2R8VHN0 | A0A2R8VHN0_MOUSE | Protein NLRC3 | Nlrc3 | 1,199 | Annotation score: |
Sequence cautioni
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_027139 | 1 – 667 | Missing in isoform 3 and isoform 4. 1 PublicationAdd BLAST | 667 | |
Alternative sequenceiVSP_027140 | 1 – 636 | Missing in isoform 5. 1 PublicationAdd BLAST | 636 | |
Alternative sequenceiVSP_027141 | 1 – 27 | MRRRY…GEYGC → MQAEPFSTLEQPPWQEGDNI GSPGSVLALYSQLLAANTDS TRKQEVWTDRETCLAYSVGS PAEQV in isoform 2. 1 PublicationAdd BLAST | 27 | |
Alternative sequenceiVSP_027142 | 637 – 641 | YCQSL → MAPLP in isoform 5. 1 Publication | 5 | |
Alternative sequenceiVSP_027143 | 643 – 688 | LDNNQ…ALARS → WVWGPCRERAKEKEPLEWFL ASSHPFPCSLLRLLEFHSWV LSHHSN in isoform 2. 1 PublicationAdd BLAST | 46 | |
Alternative sequenceiVSP_027144 | 668 – 670 | RKI → MAG in isoform 3 and isoform 4. 1 Publication | 3 | |
Alternative sequenceiVSP_027145 | 689 – 1064 | Missing in isoform 2. 1 PublicationAdd BLAST | 376 | |
Alternative sequenceiVSP_027146 | 841 – 875 | RENSI…NLLHD → MSPQPARKLHQPRGSPGPHS SSLQEQHSEALGPDS in isoform 5. 1 PublicationAdd BLAST | 35 | |
Alternative sequenceiVSP_027147 | 876 – 1064 | Missing in isoform 5. 1 PublicationAdd BLAST | 189 | |
Alternative sequenceiVSP_027148 | 979 | D → E in isoform 4. 1 Publication | 1 | |
Alternative sequenceiVSP_027149 | 980 – 1064 | Missing in isoform 4. 1 PublicationAdd BLAST | 85 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AK220314 mRNA Translation: BAD90390.1 Different initiation. AK079766 mRNA Translation: BAC37747.1 AK084199 mRNA Translation: BAC39136.1 AK171971 mRNA Translation: BAE42752.1 BC130223 mRNA Translation: AAI30224.1 |
CCDSi | CCDS70677.1 [Q5DU56-3] |
RefSeqi | NP_780756.1, NM_175547.3 [Q5DU56-3] |
Genome annotation databases
Ensembli | ENSMUST00000180200; ENSMUSP00000137325; ENSMUSG00000049871 [Q5DU56-3] |
GeneIDi | 268857 |
KEGGi | mmu:268857 |
UCSCi | uc007xzd.1, mouse [Q5DU56-3] uc007xze.1, mouse [Q5DU56-4] |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AK220314 mRNA Translation: BAD90390.1 Different initiation. AK079766 mRNA Translation: BAC37747.1 AK084199 mRNA Translation: BAC39136.1 AK171971 mRNA Translation: BAE42752.1 BC130223 mRNA Translation: AAI30224.1 |
CCDSi | CCDS70677.1 [Q5DU56-3] |
RefSeqi | NP_780756.1, NM_175547.3 [Q5DU56-3] |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 10090.ENSMUSP00000137628 |
PTM databases
PhosphoSitePlusi | Q5DU56 |
Proteomic databases
EPDi | Q5DU56 |
PaxDbi | Q5DU56 |
PRIDEi | Q5DU56 |
Protocols and materials databases
Antibodypediai | 56241, 46 antibodies |
Genome annotation databases
Ensembli | ENSMUST00000180200; ENSMUSP00000137325; ENSMUSG00000049871 [Q5DU56-3] |
GeneIDi | 268857 |
KEGGi | mmu:268857 |
UCSCi | uc007xzd.1, mouse [Q5DU56-3] uc007xze.1, mouse [Q5DU56-4] |
Organism-specific databases
CTDi | 197358 |
MGIi | MGI:2444070, Nlrc3 |
Phylogenomic databases
eggNOGi | KOG4308, Eukaryota |
GeneTreei | ENSGT00940000159861 |
HOGENOMi | CLU_017147_4_1_1 |
InParanoidi | Q5DU56 |
OrthoDBi | 259987at2759 |
PhylomeDBi | Q5DU56 |
Miscellaneous databases
BioGRID-ORCSi | 268857, 0 hits in 17 CRISPR screens |
PROi | PR:Q5DU56 |
RNActi | Q5DU56, protein |
SOURCEi | Search... |
Gene expression databases
Bgeei | ENSMUSG00000049871, Expressed in lymph node and 135 other tissues |
ExpressionAtlasi | Q5DU56, baseline and differential |
Genevisiblei | Q5DU56, MM |
Family and domain databases
Gene3Di | 3.80.10.10, 4 hits |
InterProi | View protein in InterPro IPR001611, Leu-rich_rpt IPR032675, LRR_dom_sf IPR007111, NACHT_NTPase IPR041267, NLRP_HD2 IPR041075, NOD2_WH IPR027417, P-loop_NTPase |
Pfami | View protein in Pfam PF13516, LRR_6, 9 hits PF05729, NACHT, 1 hit PF17776, NLRC4_HD2, 1 hit PF17779, NOD2_WH, 1 hit |
SUPFAMi | SSF52540, SSF52540, 1 hit |
PROSITEi | View protein in PROSITE PS50837, NACHT, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | NLRC3_MOUSE | |
Accessioni | Q5DU56Primary (citable) accession number: Q5DU56 Secondary accession number(s): A1L3P6 Q8BV65 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | July 24, 2007 |
Last sequence update: | July 24, 2007 | |
Last modified: | December 2, 2020 | |
This is version 108 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- MGD cross-references
Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot - SIMILARITY comments
Index of protein domains and families