UniProtKB - Q58EF7 (Q58EF7_DANRE)
Protein
Submitted name:
Actin-binding LIM protein 1b
Gene
ablim1b
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Functioni
GO - Molecular functioni
- actin filament binding Source: GO_Central
- metal ion binding Source: UniProtKB-KW
GO - Biological processi
- cilium assembly Source: GO_Central
- lamellipodium assembly Source: GO_Central
Keywordsi
Ligand | Metal-binding, Zinc |
Names & Taxonomyi
Protein namesi | Submitted name: Actin-binding LIM protein 1bImportedSubmitted name: Zgc:112954Imported |
Gene namesi | |
Organismi | Danio rerio (Zebrafish) (Brachydanio rerio)Imported |
Taxonomic identifieri | 7955 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio |
Proteomesi |
|
Organism-specific databases
ZFINi | ZDB-GENE-050327-91, ablim1b |
Subcellular locationi
Cytoskeleton
- actin cytoskeleton Source: GO_Central
- stress fiber Source: GO_Central
Expressioni
Gene expression databases
Bgeei | ENSDARG00000045064, Expressed in retina and 31 other tissues |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 23 – 82 | LIM zinc-bindingInterPro annotationAdd BLAST | 60 | |
Domaini | 83 – 142 | LIM zinc-bindingInterPro annotationAdd BLAST | 60 | |
Domaini | 150 – 209 | LIM zinc-bindingInterPro annotationAdd BLAST | 60 | |
Domaini | 210 – 269 | LIM zinc-bindingInterPro annotationAdd BLAST | 60 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 334 – 354 | DisorderedSequence analysisAdd BLAST | 21 |
Keywords - Domaini
LIM domainPROSITE-ProRule annotationARBA annotationPhylogenomic databases
GeneTreei | ENSGT00950000182850 |
HOGENOMi | CLU_001357_12_0_1 |
OMAi | SGFFMKN |
OrthoDBi | 192350at2759 |
Family and domain databases
InterProi | View protein in InterPro IPR028448, ABLIM1 IPR032402, AbLIM_anchor IPR001781, Znf_LIM |
PANTHERi | PTHR24213:SF18, PTHR24213:SF18, 1 hit |
Pfami | View protein in Pfam PF16182, AbLIM_anchor, 1 hit PF00412, LIM, 4 hits |
SMARTi | View protein in SMART SM00132, LIM, 4 hits |
PROSITEi | View protein in PROSITE PS00478, LIM_DOMAIN_1, 3 hits PS50023, LIM_DOMAIN_2, 4 hits |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 7 potential isoforms that are computationally mapped.Show allAlign All
Q58EF7-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MVMVKEKVAH PQDPHHPPGK LVIQCYKCGE PCKGEVLRVQ SKHFHIKCFT
60 70 80 90 100
CKVCGCDLAQ GGFFMKNGEY LCTLDYQRLH GTRCNGCGDF VEGEVVTALG
110 120 130 140 150
KTYHPTCFVC TVCKRPFPAG DRVTFNGKDC LCQRCVQPTS PTSKDISASS
160 170 180 190 200
NCAGCGRDIK NGQALLALDS QWHLGCFKCK ACGKVLSGEY ISKDGSPYCE
210 220 230 240 250
KDYQIHFGVQ CEACHQFITG KVLEAGDKHY HPSCARCSRC NQMFTEGEEM
260 270 280 290 300
YLQGSTVWHP DCKNNSRVEE KYRPTRSSSE SICSRPGSSI PGSPGHTIYA
310 320 330 340 350
KVDNEIIDYK DLAAIPRVKA IYDIERPDMI SYESLHSTSS TLERQGRHSP
GEVK
Computationally mapped potential isoform sequencesi
There are 7 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketU3JB13 | U3JB13_DANRE | Actin-binding LIM protein 1b | ablim1b | 758 | Annotation score: | ||
A0A2R8QJ18 | A0A2R8QJ18_DANRE | Actin-binding LIM protein 1b | ablim1b | 292 | Annotation score: | ||
A0A2R8RQ55 | A0A2R8RQ55_DANRE | Actin-binding LIM protein 1b | ablim1b | 333 | Annotation score: | ||
E9QIZ2 | E9QIZ2_DANRE | Actin-binding LIM protein 1b | ablim1b | 201 | Annotation score: | ||
F1REG0 | F1REG0_DANRE | Actin-binding LIM protein 1b | ablim1b | 110 | Annotation score: | ||
A0A2R8QQ60 | A0A2R8QQ60_DANRE | Actin-binding LIM protein 1b | ablim1b | 351 | Annotation score: | ||
U3JA64 | U3JA64_DANRE | Actin-binding LIM protein 1b | ablim1b | 33 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BX465198 Genomic DNA No translation available. CU464184 Genomic DNA No translation available. CU915376 Genomic DNA No translation available. BC091932 mRNA Translation: AAH91932.1 |
RefSeqi | NP_001014385.1, NM_001014363.1 |
Genome annotation databases
Ensembli | ENSDART00000042572; ENSDARP00000042571; ENSDARG00000045064 |
GeneIDi | 541550 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BX465198 Genomic DNA No translation available. CU464184 Genomic DNA No translation available. CU915376 Genomic DNA No translation available. BC091932 mRNA Translation: AAH91932.1 |
RefSeqi | NP_001014385.1, NM_001014363.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Genome annotation databases
Ensembli | ENSDART00000042572; ENSDARP00000042571; ENSDARG00000045064 |
GeneIDi | 541550 |
Organism-specific databases
CTDi | 541550 |
ZFINi | ZDB-GENE-050327-91, ablim1b |
Phylogenomic databases
GeneTreei | ENSGT00950000182850 |
HOGENOMi | CLU_001357_12_0_1 |
OMAi | SGFFMKN |
OrthoDBi | 192350at2759 |
Gene expression databases
Bgeei | ENSDARG00000045064, Expressed in retina and 31 other tissues |
Family and domain databases
InterProi | View protein in InterPro IPR028448, ABLIM1 IPR032402, AbLIM_anchor IPR001781, Znf_LIM |
PANTHERi | PTHR24213:SF18, PTHR24213:SF18, 1 hit |
Pfami | View protein in Pfam PF16182, AbLIM_anchor, 1 hit PF00412, LIM, 4 hits |
SMARTi | View protein in SMART SM00132, LIM, 4 hits |
PROSITEi | View protein in PROSITE PS00478, LIM_DOMAIN_1, 3 hits PS50023, LIM_DOMAIN_2, 4 hits |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | Q58EF7_DANRE | |
Accessioni | Q58EF7Primary (citable) accession number: Q58EF7 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | April 26, 2005 |
Last sequence update: | April 26, 2005 | |
Last modified: | February 10, 2021 | |
This is version 117 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |