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Protein

Chaperonin 60 subunit alpha 2, chloroplastic

Gene

CPN60A2

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Involved in protein assisted folding.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionChaperone
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Chaperonin 60 subunit alpha 2, chloroplastic
Short name:
CPN-60 alpha 2
Alternative name(s):
Protein EMBRYO DEFECTIVE 3007
Gene namesi
Name:CPN60A2
Synonyms:Cpn60-A(1), EMB3007
Ordered Locus Names:At5g18820
ORF Names:F17K4.70
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 5

Organism-specific databases

AraportiAT5G18820
TAIRilocus:2144955 AT5G18820

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 32ChloroplastSequence analysisAdd BLAST32
ChainiPRO_000041368333 – 575Chaperonin 60 subunit alpha 2, chloroplasticAdd BLAST543

Proteomic databases

PaxDbiQ56XV8
PRIDEiQ56XV8

Expressioni

Gene expression databases

ExpressionAtlasiQ56XV8 baseline and differential
GenevisibleiQ56XV8 AT

Interactioni

Subunit structurei

Part of the Cpn60 complex composed of 7 alpha and 7 beta subunits.By similarity

GO - Molecular functioni

Protein-protein interaction databases

BioGridi17276, 1 interactor
STRINGi3702.AT5G18820.1

Structurei

3D structure databases

ProteinModelPortaliQ56XV8
SMRiQ56XV8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the chaperonin (HSP60) family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG0356 Eukaryota
COG0459 LUCA
HOGENOMiHOG000076290
InParanoidiQ56XV8
OMAiHFITNPD
OrthoDBiEOG093606F2
PhylomeDBiQ56XV8

Family and domain databases

CDDicd03344 GroEL, 1 hit
Gene3Di1.10.560.10, 2 hits
3.30.260.10, 2 hits
3.50.7.10, 1 hit
InterProiView protein in InterPro
IPR001844 Chaprnin_Cpn60
IPR002423 Cpn60/TCP-1
IPR027409 GroEL-like_apical_dom_sf
IPR027413 GROEL-like_equatorial_sf
IPR027410 TCP-1-like_intermed_sf
PfamiView protein in Pfam
PF00118 Cpn60_TCP1, 1 hit
PRINTSiPR00298 CHAPERONIN60
SUPFAMiSSF48592 SSF48592, 2 hits
SSF52029 SSF52029, 1 hit
SSF54849 SSF54849, 2 hits
TIGRFAMsiTIGR02348 GroEL, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All

Q56XV8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFAVSPSSFS PTTISPRRSG QRNEPRKFSV VRAGAKRILY GKDSREKLQA
60 70 80 90 100
GIDKLADAVS ITLGPRGRNV VLAEKDTIKV INDGVTIAKS IELPDTIENA
110 120 130 140 150
GATLIQEVAI KMNESAGDGT TTAIILAREM IKAGSLAIAF GANAVSVKNG
160 170 180 190 200
MNKTVKELVR VLQMKSIPVQ GKNDIKAVAS ISAGNDEFVG NLIAETVEKI
210 220 230 240 250
GPDGVISIES SSTSETSVIV EEGMKFDKGY MSPHFITNQE KSTVEFDKAK
260 270 280 290 300
ILVTDQKITS AKELVPLLEK TSQLSVPLLI IAEDISAEVL EILVVNKKQG
310 320 330 340 350
LINVAVVKCP GMLDGKKALL QDIALMTGAD YLSGDLGMSL MGATSDQLGV
360 370 380 390 400
SRRVVITANS TTIVADASTK PEIQARIAQM KKDLAETDNS YLSKKIAERI
410 420 430 440 450
AKLTGGVAVI KVGGHTETEL EDRKLRIEDA KNATFAAMRE GIVPGGGATY
460 470 480 490 500
IHLLDEIPRI KKNLMEDSYE QIGADIVAMA LTAPAMAIAT NAGVDGSVVV
510 520 530 540 550
QKTRELEWRS GYNAMSGKYE DLLNAGIADP CRVSRFALQN AVSVAGIILT
560 570
TQAVLVEKIK QPKPAVPQVP GIPTS
Length:575
Mass (Da):61,193
Last modified:May 10, 2005 - v1
Checksum:i2B21F1FDDBC96EB6
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8BAS2A0A1P8BAS2_ARATH
TCP-1/cpn60 chaperonin family prote...
Cpn60alpha2 chaperonin-60alpha2, EMB3007, embryo defective 3007, At5g18820, F17K4.70 Cpn60alpha2 chaperonin-60alpha2, EMB3007, embryo defective 3007, At5g18820, F17K4.70, F17K4_70
469Annotation score:
A0A1P8BAR0A0A1P8BAR0_ARATH
TCP-1/cpn60 chaperonin family prote...
Cpn60alpha2 chaperonin-60alpha2, EMB3007, embryo defective 3007, At5g18820, F17K4.70 Cpn60alpha2 chaperonin-60alpha2, EMB3007, embryo defective 3007, At5g18820, F17K4.70, F17K4_70
443Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC068655 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED92616.1
AK221565 mRNA Translation: BAD94998.1
RefSeqiNP_197383.1, NM_121887.3
UniGeneiAt.54910

Genome annotation databases

EnsemblPlantsiAT5G18820.1; AT5G18820.1; AT5G18820
GeneIDi832000
GrameneiAT5G18820.1; AT5G18820.1; AT5G18820
KEGGiath:AT5G18820

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC068655 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED92616.1
AK221565 mRNA Translation: BAD94998.1
RefSeqiNP_197383.1, NM_121887.3
UniGeneiAt.54910

3D structure databases

ProteinModelPortaliQ56XV8
SMRiQ56XV8
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi17276, 1 interactor
STRINGi3702.AT5G18820.1

Proteomic databases

PaxDbiQ56XV8
PRIDEiQ56XV8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G18820.1; AT5G18820.1; AT5G18820
GeneIDi832000
GrameneiAT5G18820.1; AT5G18820.1; AT5G18820
KEGGiath:AT5G18820

Organism-specific databases

AraportiAT5G18820
TAIRilocus:2144955 AT5G18820

Phylogenomic databases

eggNOGiKOG0356 Eukaryota
COG0459 LUCA
HOGENOMiHOG000076290
InParanoidiQ56XV8
OMAiHFITNPD
OrthoDBiEOG093606F2
PhylomeDBiQ56XV8

Miscellaneous databases

PROiPR:Q56XV8

Gene expression databases

ExpressionAtlasiQ56XV8 baseline and differential
GenevisibleiQ56XV8 AT

Family and domain databases

CDDicd03344 GroEL, 1 hit
Gene3Di1.10.560.10, 2 hits
3.30.260.10, 2 hits
3.50.7.10, 1 hit
InterProiView protein in InterPro
IPR001844 Chaprnin_Cpn60
IPR002423 Cpn60/TCP-1
IPR027409 GroEL-like_apical_dom_sf
IPR027413 GROEL-like_equatorial_sf
IPR027410 TCP-1-like_intermed_sf
PfamiView protein in Pfam
PF00118 Cpn60_TCP1, 1 hit
PRINTSiPR00298 CHAPERONIN60
SUPFAMiSSF48592 SSF48592, 2 hits
SSF52029 SSF52029, 1 hit
SSF54849 SSF54849, 2 hits
TIGRFAMsiTIGR02348 GroEL, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiCPNA2_ARATH
AccessioniPrimary (citable) accession number: Q56XV8
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 19, 2011
Last sequence update: May 10, 2005
Last modified: May 23, 2018
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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