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Protein

dTDP-4-dehydrorhamnose 3,5-epimerase

Gene

rmlC

Organism
Xanthomonas campestris pv. campestris
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.UniRule annotation

Catalytic activityi

dTDP-4-dehydro-6-deoxy-alpha-D-glucose = dTDP-4-dehydro-beta-L-rhamnose.UniRule annotation

Pathwayi: dTDP-L-rhamnose biosynthesis

This protein is involved in the pathway dTDP-L-rhamnose biosynthesis, which is part of Carbohydrate biosynthesis.UniRule annotation
View all proteins of this organism that are known to be involved in the pathway dTDP-L-rhamnose biosynthesis and in Carbohydrate biosynthesis.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomeraseUniRule annotationImported

Enzyme and pathway databases

UniPathwayi
UPA00124

Names & Taxonomyi

Protein namesi
Recommended name:
dTDP-4-dehydrorhamnose 3,5-epimeraseUniRule annotation (EC:5.1.3.13UniRule annotation)
Alternative name(s):
Thymidine diphospho-4-keto-rhamnose 3,5-epimeraseUniRule annotation
Gene namesi
Name:rmlCImported
OrganismiXanthomonas campestris pv. campestrisImported
Taxonomic identifieri340 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliQ56809
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108URP Bacteria
COG1898 LUCA
HOGENOMiHOG000227724

Family and domain databases

Gene3Di2.60.120.10, 1 hit
InterProiView protein in InterPro
IPR000888 dTDP_sugar_isom
IPR014710 RmlC-like_jellyroll
IPR011051 RmlC_Cupin_sf
PANTHERiPTHR21047 PTHR21047, 1 hit
PfamiView protein in Pfam
PF00908 dTDP_sugar_isom, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD001462 dTDP_sugar_isom, 1 hit
SUPFAMiSSF51182 SSF51182, 1 hit
TIGRFAMsiTIGR01221 rmlC, 1 hit

Sequencei

Sequence statusi: Complete.

Q56809-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKVIETTLPG CVVIEPAVFG DERGQFFETW NAERFGQHGL PTSFVQSNVS
60 70 80 90 100
TSARGVLRGL HYQWPRPQGK LVSVLEGEVY DVAVDIRAGS PHFGRWTAVL
110 120 130 140 150
LSAENRRQVW IPEGFAHGFA VLSEKALFSY LCTDVYVKEA DAGVRWDDAA
160 170 180
IGIDWPVSDP SLSAKDAKAP FLDEVPVDRL PVYRP
Length:185
Mass (Da):20,517
Last modified:October 1, 2001 - v2
Checksum:iD2E371BBC175786A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF204145 Genomic DNA Translation: AAK53465.1
RefSeqiWP_011035866.1, NZ_LMTU01000035.1

Genome annotation databases

GeneIDi35546469
PATRICifig|340.15.peg.3796

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF204145 Genomic DNA Translation: AAK53465.1
RefSeqiWP_011035866.1, NZ_LMTU01000035.1

3D structure databases

ProteinModelPortaliQ56809
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi35546469
PATRICifig|340.15.peg.3796

Phylogenomic databases

eggNOGiENOG4108URP Bacteria
COG1898 LUCA
HOGENOMiHOG000227724

Enzyme and pathway databases

UniPathwayi
UPA00124

Family and domain databases

Gene3Di2.60.120.10, 1 hit
InterProiView protein in InterPro
IPR000888 dTDP_sugar_isom
IPR014710 RmlC-like_jellyroll
IPR011051 RmlC_Cupin_sf
PANTHERiPTHR21047 PTHR21047, 1 hit
PfamiView protein in Pfam
PF00908 dTDP_sugar_isom, 1 hit
ProDomiView protein in ProDom or Entries sharing at least one domain
PD001462 dTDP_sugar_isom, 1 hit
SUPFAMiSSF51182 SSF51182, 1 hit
TIGRFAMsiTIGR01221 rmlC, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ56809_XANCE
AccessioniPrimary (citable) accession number: Q56809
Secondary accession number(s): Q7CLV0
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: October 1, 2001
Last modified: March 28, 2018
This is version 109 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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