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Entry version 57 (07 Oct 2020)
Sequence version 1 (24 May 2005)
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Protein

ELMO domain-containing protein F

Gene

elmoF

Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • Rac GTPase binding Source: GO_Central

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
ELMO domain-containing protein F
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:elmoF
ORF Names:DDB_G0267548
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDictyostelium discoideum (Slime mold)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri44689 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaAmoebozoaEvoseaEumycetozoaDictyosteliaDictyostelialesDictyosteliaceaeDictyostelium
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002195 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componentsi: Chromosome 1, Unassembled WGS sequence

Organism-specific databases

Dictyostelium discoideum online informatics resource

More...
dictyBasei
DDB_G0267548, elmoF

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003332831 – 1185ELMO domain-containing protein FAdd BLAST1185

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q55GR7

PRoteomics IDEntifications database

More...
PRIDEi
Q55GR7

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini275 – 488ELMOPROSITE-ProRule annotationAdd BLAST214

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi107 – 115Poly-Ser9
Compositional biasi131 – 134Poly-Asn4
Compositional biasi179 – 193Poly-AsnAdd BLAST15
Compositional biasi357 – 367Poly-AsnAdd BLAST11
Compositional biasi370 – 394Poly-AsnAdd BLAST25
Compositional biasi400 – 405Poly-Asn6
Compositional biasi581 – 608Gln-richAdd BLAST28
Compositional biasi692 – 697Poly-Ser6
Compositional biasi742 – 748Poly-Gln7
Compositional biasi767 – 780Poly-ThrAdd BLAST14
Compositional biasi810 – 841Lys-richAdd BLAST32
Compositional biasi915 – 942Asn-richAdd BLAST28
Compositional biasi950 – 966Poly-GlnAdd BLAST17
Compositional biasi1018 – 1021Poly-Asn4
Compositional biasi1055 – 1063Poly-Asn9
Compositional biasi1090 – 1093Poly-Gly4

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2998, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_272547_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q55GR7

Identification of Orthologs from Complete Genome Data

More...
OMAi
FYIHILE

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR006816, ELMO_dom

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF04727, ELMO_CED12, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51335, ELMO, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q55GR7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
METQDTLTMI DLTSSVPSLS LSNVIQQQNE VIESENKNVN TELLTLSTQT
60 70 80 90 100
VISFVYCNRQ ASLFNLLTQM LTTNTFSPIN PSVEIPFQPS PYPSTIHNNS
110 120 130 140 150
STSINQSSSP SSSSSTTPSS STQSSPILQG NNNNITGKPS LMFNILDKAI
160 170 180 190 200
NAISHQYKKN FYIHILEKPI SSPNLISTNP NNNSNNNNNN NNNTAEDHDK
210 220 230 240 250
LVAGCLSFIN HMLSSAPSYF DFERYRQVLS SQGVNEVIKT FVKSVNPNVR
260 270 280 290 300
LELLHYQKHK INGIKASKQT SIFLDRQNVL SFLNRLCKMS FPNNGGDSPT
310 320 330 340 350
TNEEKMKLLG FETDDLHLEL QSTGLLGIRN MIYFCARYFR IYDEILKAQI
360 370 380 390 400
KKFKEININN NNNSNNNDEN NNNNNNNNNN NNNNNNNNNN NNNNSDNVEN
410 420 430 440 450
NNNNNVENED DSYYSFSRVG FTLTNLIFEL YIEDENLYEI IFDQDDWFEE
460 470 480 490 500
LFCISFELFD EIWEREGTCQ EDYIPVLHKT RAVLSRIKWT NPSSIASFQK
510 520 530 540 550
TLGCVLDEMW SKTNDLKEEK EMNARAGGLS DSIMGVPHGN ANGGSGASGN
560 570 580 590 600
LRFKKFFNEK FKQYRKSTDS INSDGSEAIF QPPPQSPQSQ QQSQQQTQQT
610 620 630 640 650
QQPASPLQTS SSSDIQKSPV PHKINTKSMS FKKLFSDLKS AETERKNSLT
660 670 680 690 700
GSNGITDGGD SNPNSGAEVL SLPNTPRYLG GDNDNEGSEN GSSSSFSFEK
710 720 730 740 750
LSRKLRSGSS SIKDKSSSPK FNSLTGELTM NISSSSSLEG NQQQQQQQST
760 770 780 790 800
NSSTTSPNVS PYLQSVTTTT TNTTTATTTT DDQSQQQVPP QFNIDDGKRS
810 820 830 840 850
LKSSGNSIYK SVKKAMSNLG EKGKDIGKKV KSKKEKKKKS KQQVEHSFED
860 870 880 890 900
DCNNSANNSS YNNSPYIIPG DLELPTNFRP SLDLDFDKNS DSSYEDSENE
910 920 930 940 950
TNTLDDIQSI DSSSNNNSNN NSNNNSSSNL NNNSTSSINL MNDQSLQSVQ
960 970 980 990 1000
QPQPQQQQQQ QQQQQQPIVE QQPQANLEKE QNNSSTQVTP IISSAKLDVN
1010 1020 1030 1040 1050
EKLESIPTVI IEPIDDDNNN NGINRSISDQ SLTDAMSLNY QITQKQKSRL
1060 1070 1080 1090 1100
STDENQNQNN NNNKLSDNSS NEQHPVSPSY PRRQINIING GGGSAGRNST
1110 1120 1130 1140 1150
LNSGSSSLSK KPVLSRAPIP SVFSSSSHNP PAMVKSPSIK HLVTFFEVKS
1160 1170 1180
SELKDNSSTV SGSVNNNLNV GIPQLKREKS FKSDF
Length:1,185
Mass (Da):131,579
Last modified:May 24, 2005 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i2C0F4E5703C0EEA5
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AAFI02000003 Genomic DNA Translation: EAL73227.1

Genome annotation databases

Ensembl protists genome annotation project

More...
EnsemblProtistsi
EAL73227; EAL73227; DDB_G0267548

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ddi:DDB_G0267548

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAFI02000003 Genomic DNA Translation: EAL73227.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Proteomic databases

PaxDbiQ55GR7
PRIDEiQ55GR7

Genome annotation databases

EnsemblProtistsiEAL73227; EAL73227; DDB_G0267548
KEGGiddi:DDB_G0267548

Organism-specific databases

dictyBaseiDDB_G0267548, elmoF

Phylogenomic databases

eggNOGiKOG2998, Eukaryota
HOGENOMiCLU_272547_0_0_1
InParanoidiQ55GR7
OMAiFYIHILE

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q55GR7

Family and domain databases

InterProiView protein in InterPro
IPR006816, ELMO_dom
PfamiView protein in Pfam
PF04727, ELMO_CED12, 1 hit
PROSITEiView protein in PROSITE
PS51335, ELMO, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiELMOF_DICDI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q55GR7
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: May 24, 2005
Last modified: October 7, 2020
This is version 57 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Reference proteome

Documents

  1. Dictyostelium discoideum
    Dictyostelium discoideum: entries, gene names and cross-references to dictyBase
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