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Protein

Nuclear pore complex protein DDB_G0274915

Gene

DDB_G0274915

Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Nuclear pore complex protein DDB_G0274915
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:DDB_G0274915
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDictyostelium discoideum (Slime mold)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri44689 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaAmoebozoaMycetozoaDictyostelidsDictyostelialesDictyosteliaceaeDictyostelium
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002195 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componentsi: Chromosome 2, Unassembled WGS sequence

Organism-specific databases

Dictyostelium discoideum online informatics resource

More...
dictyBasei
DDB_G0274915

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003436331 – 1839Nuclear pore complex protein DDB_G0274915Add BLAST1839

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q555D2

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
44689.DDB0266503

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q555D2

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi80 – 90Ser-richAdd BLAST11
Compositional biasi104 – 107Poly-Thr4
Compositional biasi108 – 143Poly-AsnAdd BLAST36
Compositional biasi203 – 244Thr-richAdd BLAST42
Compositional biasi490 – 871Thr-richAdd BLAST382
Compositional biasi512 – 1807Ser-richAdd BLAST1296
Compositional biasi1072 – 1649Thr-richAdd BLAST578

Phylogenomic databases

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q555D2

Identification of Orthologs from Complete Genome Data

More...
OMAi
LGFISHE

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR025574 Nucleoporin_FG_rpt
IPR037665 Nucleoporin_S59-like
IPR037637 NUP98-NUP96

The PANTHER Classification System

More...
PANTHERi
PTHR23198 PTHR23198, 4 hits
PTHR23198:SF6 PTHR23198:SF6, 4 hits

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF13634 Nucleoporin_FG, 6 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q555D2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNGRIRQNQT AYNPYSTSGR NNRNTINSER DESENGSLLM NGSSSPPNNQ
60 70 80 90 100
QTNKAGFFKN MVSKLLSKPL QWMFSNFDES SSSSSSSSSS YDDGNNIPQK
110 120 130 140 150
GSSTTTTNIN NNNNNNNSNS NSNSNNNTNN QNNNSNNNNN NNNKINISDD
160 170 180 190 200
YDSNLSKVKV PSGINFDTSS LSVADLTRSY QTNISNKNIL DNKPILKKDQ
210 220 230 240 250
NPTTTTTTTT AAAVPKKSVA IGGVTNNDKK PTTTTTATTS ILKTNINSLY
260 270 280 290 300
PNLSQDRINA NASTFNSSRN IKNNLSPTQT TLKITNNNTI YSNSQFKKKP
310 320 330 340 350
ISSTFNASPF ESSIINSSSI LSKRKQFDDN NNSNINDNQS IYNRQSIYSP
360 370 380 390 400
NSKIEQPPLK KRLPNADGTD NSVMMATSQA AKRILEHLDS FSNPVLAHYN
410 420 430 440 450
PSSTMAPSSQ SLYNGNDSTY QPPTSVYRPK IKIPQISINY KYNPYGLSKL
460 470 480 490 500
LEKKPKSNKD LGLEIPTNSI TSSVSLYKKP LNKKSEDEST EPIKTYATPS
510 520 530 540 550
TTTTTATVAN TSSSSSSSSS SSSSSSSSSS SSSSSSSLFS SKPATISSNT
560 570 580 590 600
TTTTTTSSPP SSSLFSTTSS AASTNTATAS SLFSATPATT IATSSPSTST
610 620 630 640 650
STSSSSSGNE KKLDNMFTSD SNKSNLFSKE NDGGGVNPFK NLATTVSKTD
660 670 680 690 700
FIGINGVSTS TSSSTSTSKS SPIAKKDITS INKSAPYEKK KRGLENEDTP
710 720 730 740 750
LDVPGLKNIE PPSGLFNFSG IKPIETTLFS VSTTTPLATT TTASSSSSSS
760 770 780 790 800
LFSSPPTTDK SSADKSSADK SSTDKSTSPV TTSIPSFTSS STSTSLFGPT
810 820 830 840 850
TTTTDKDSKT ASIFSTKPTT EGLFSKPTTS LTSSSLFSST ITTATTTPSI
860 870 880 890 900
FGDASKSSTS TSLFGSSNTT TAKPPASFGV NLSAAPKKSS PPPPPESDEE
910 920 930 940 950
DEENEGDEGD EEGDENGELE AEEAFYVPPD SDEENEGDGN GGDLEAEEEF
960 970 980 990 1000
YVPPDSDEEK EKEKKPKTKQ QSTQLTGLFA APPKGGSLFG NTPTGGSLFG
1010 1020 1030 1040 1050
SAPTGSSLFS GGSLLTSSFL TKKGENDDDS SDEDSNKKRK KKRESSSSSS
1060 1070 1080 1090 1100
TSSNIIIPTT SKKEKIDDKP STTTTTTTTS LFGSTTTSGL FSNPSTTSTG
1110 1120 1130 1140 1150
SLFSSNPLGS TASTSSLFGA STLASTATTT ATPTTSLFGS TTPSSSSSSS
1160 1170 1180 1190 1200
SSSSSTTSTT TPSNSLFGTS SSSSSTSSSL FGSTTSATTP SSLFGTTTTS
1210 1220 1230 1240 1250
SDSKSETKTT PSLSSGGLFS TTSASPFSIP SSTSSSGLFG STNQTESKVA
1260 1270 1280 1290 1300
TTTTTAATTA TPSTSLFGST TTPSTSSSTS SLTTTPSTGL FGASSSTTPS
1310 1320 1330 1340 1350
TGLFGSATTP STGLFGASSS SSSSSISSSS TTSTTTTPST GLFGSTTPST
1360 1370 1380 1390 1400
GLFGSTTTAA TTTPSTGLFG STPSSTTSTT TTPPNGLFGS TTPSTALFGT
1410 1420 1430 1440 1450
STPATTSTLT TSTSTTPSTG LFGSSSSIAT TTPSTGLFGS TSSSTTNTAP
1460 1470 1480 1490 1500
STGLFGSTTT STTATPFGSS SSTPSTGLFG SSSSSTSSSL SSSSTTATQP
1510 1520 1530 1540 1550
TGLFGSTAPS TGLFGSTTAT NPSTGLFGST TTTSTTTTPS TGLFGSSSST
1560 1570 1580 1590 1600
PSSTGLFGSS SSTTSSTTTP STGLFGSAAP STSSPFSIPT SSTPATSNPF
1610 1620 1630 1640 1650
GSNPFPTSSP TTVSSTPSSN PFGAPSLSNS TSSSSLFGAP TTSTAATTTP
1660 1670 1680 1690 1700
SFGSSPFGAP SSTSSTPFGA SPFGAPTSTS SPPFGAPTSA SSTPFGAPQI
1710 1720 1730 1740 1750
STSSSTNLFG GASSSTAAPS FVSSPFGAPI TSSSSSSSSS LPFGAPTTSS
1760 1770 1780 1790 1800
SSSTPFGASP FGNSMASTTS PFGAPAASPS PFGIQAASPS PFGAPAASPS
1810 1820 1830
PFGSTPSTAP NPFGNFGAVP ANGFSLGKMG TSKKPAKKK
Length:1,839
Mass (Da):186,336
Last modified:July 22, 2008 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC4B9CCBF9493AF0D
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AAFI02000012 Genomic DNA Translation: EEU04130.1

NCBI Reference Sequences

More...
RefSeqi
XP_002649182.2, XM_002649136.1

Genome annotation databases

Ensembl protists genome annotation project

More...
EnsemblProtistsi
EEU04130; EEU04130; DDB_G0274915

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
8619570

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ddi:DDB_G0274915

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAFI02000012 Genomic DNA Translation: EEU04130.1
RefSeqiXP_002649182.2, XM_002649136.1

3D structure databases

SMRiQ555D2
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi44689.DDB0266503

Proteomic databases

PaxDbiQ555D2

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblProtistsiEEU04130; EEU04130; DDB_G0274915
GeneIDi8619570
KEGGiddi:DDB_G0274915

Organism-specific databases

dictyBaseiDDB_G0274915

Phylogenomic databases

InParanoidiQ555D2
OMAiLGFISHE

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q555D2

Family and domain databases

InterProiView protein in InterPro
IPR025574 Nucleoporin_FG_rpt
IPR037665 Nucleoporin_S59-like
IPR037637 NUP98-NUP96
PANTHERiPTHR23198 PTHR23198, 4 hits
PTHR23198:SF6 PTHR23198:SF6, 4 hits
PfamiView protein in Pfam
PF13634 Nucleoporin_FG, 6 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiNUPL_DICDI
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q555D2
Secondary accession number(s): C7FZZ2, Q555D3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 22, 2008
Last sequence update: July 22, 2008
Last modified: December 5, 2018
This is version 54 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Dictyostelium discoideum
    Dictyostelium discoideum: entries, gene names and cross-references to dictyBase
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