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UniProtKB - Q54SF4 (Y4797_DICDI)

Entry version 56 (02 Dec 2020)
Sequence version 2 (19 Jan 2010)
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Protein

Putative uncharacterized protein DDB_G0282499

Gene

DDB_G0282499

Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...Reactomei		R-DDI-913709, O-linked glycosylation of mucins

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Putative uncharacterized protein DDB_G0282499
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:DDB_G0282499
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDictyostelium discoideum (Slime mold)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri44689 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Amoebozoa › Evosea › Eumycetozoa › Dictyostelia › Dictyosteliales › Dictyosteliaceae › Dictyostelium
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002195 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componentsi: Chromosome 3, Unassembled WGS sequence

Organism-specific databases

Dictyostelium discoideum online informatics resource

More...dictyBasei		DDB_G0282499

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

Complete GO annotation on QuickGO ...

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003512311 – 935Putative uncharacterized protein DDB_G0282499Add BLAST935

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q54SF4

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q54SF4

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili262 – 331Sequence analysisAdd BLAST70

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi71 – 78Poly-Asn8
Compositional biasi81 – 133Poly-AsnAdd BLAST53
Compositional biasi142 – 147Poly-Asn6
Compositional biasi150 – 182Poly-AsnAdd BLAST33
Compositional biasi193 – 203Poly-AsnAdd BLAST11
Compositional biasi209 – 220Poly-AsnAdd BLAST12
Compositional biasi251 – 255Poly-Asn5
Compositional biasi282 – 297Poly-AsnAdd BLAST16
Compositional biasi300 – 329Poly-AsnAdd BLAST30
Compositional biasi397 – 413Poly-GlnAdd BLAST17
Compositional biasi424 – 436Poly-AsnAdd BLAST13
Compositional biasi443 – 446Poly-Lys4
Compositional biasi467 – 490Poly-AsnAdd BLAST24
Compositional biasi536 – 555Poly-SerAdd BLAST20
Compositional biasi556 – 567Poly-ThrAdd BLAST12
Compositional biasi719 – 782Ser-richAdd BLAST64
Compositional biasi783 – 790Poly-Gly8
Compositional biasi792 – 796Poly-Asn5
Compositional biasi917 – 930Poly-GlnAdd BLAST14

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coil

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_313404_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q54SF4

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.10.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR003316, E2F_WHTH_DNA-bd_dom
IPR036388, WH-like_DNA-bd_sf
IPR036390, WH_DNA-bd_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF02319, E2F_TDP, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM01372, E2F_TDP, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF46785, SSF46785, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q54SF4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDIGLITNKE DDEENDLSIK SPYSTTKNQN NNKTKDEIIK KDFISNINYS 
        60         70         80         90        100
NNNIYSNIYN NIFNNIFNKF NTNNNNNNTT NNNPNNNNNN NNNNPNYNNN 
       110        120        130        140        150
NPNYNNNDNN PNNNNNNNNN NNNNNNNNNN NKNYINNKNY INNNNINYIN 
       160        170        180        190        200
NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNTSNNTSFN KQNNYNNNNY 
       210        220        230        240        250
NSNSSSRSNN SNNNNNNNNN DDNIYNNGKN YIPNNGIINN HSNNDINNSY 
       260        270        280        290        300
NNNNNIQNYY YKKNNNENKK KNNDNENNNY PNFNNNNNYN NYNNNDNIIN 
       310        320        330        340        350
NNNNNNNNNI NNNINNNINN INNINNNNNK IIRQHPYINN ENQQKHQKKI 
       360        370        380        390        400
QHQENSNFEQ LEKPEQLSHN SESSKTTILN ENNSYLKNDK IMLSPTQQQQ 
       410        420        430        440        450
QQQQQQQQQQ QQQYLISSSK YGYNNQNNNN NNGNSNQESI LEKKKKIRKT 
       460        470        480        490        500
RYFENEYQKL HESNIKNINN NNSNNNNNNN NNNNNNNNNN IYNEEELSLN 
       510        520        530        540        550
TSSPIQSQSQ YQVIYPHQQC PSSPTSSSTS TSSTTSSSSS SSSSSSSSSS 
       560        570        580        590        600
SSTSSTSTIT TTTTITTQST FQNQIQLPQP SPYNQFTATF INSSNGFIKK 
       610        620        630        640        650
KEKDAKKQIK VVTTLLIQHL ISNNVTKFNV RLIESLLNVD FFKLKEILDI 
       660        670        680        690        700
MECSKLVRND KCNNYVWLGL DNPEFLNFAL STFHSKINFI TKNSEFFCDN 
       710        720        730        740        750
CKLNSENGVI LNSPILQFSN VSPTLLSPSS STSSETTTST STTTNNTSTT 
       760        770        780        790        800
TISPSSNVSV NNSYSLVNMS DLYNGGSGGG SSGGGGSGGG VNNNNNVQNN 
       810        820        830        840        850
INSGRKFRYK ETELSTTVSQ FLKLLLSDKC LTIHDVCFNF NPNIEKTHDN 
       860        870        880        890        900
YISLRNSAKI KRCYDIANVF EAINLVQKSK SVEETRTQNY KWIGTTVLTN 
       910        920        930 
EYCQNNCPYI LQENYIQQQQ QLQLQQQQNQ PKPPR
Length:935
Mass (Da):106,754
Last modified:January 19, 2010 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i952733A79A0F5D7C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AAFI02000047 Genomic DNA Translation: EAL66109.2

NCBI Reference Sequences

More...RefSeqi		XP_640085.2, XM_634993.2

Genome annotation databases

Ensembl protists genome annotation project

More...EnsemblProtistsi		EAL66109; EAL66109; DDB_G0282499

Database of genes from NCBI RefSeq genomes

More...GeneIDi		8623614

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ddi:DDB_G0282499

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAFI02000047 Genomic DNA Translation: EAL66109.2
RefSeqiXP_640085.2, XM_634993.2

3D structure databases

SMRiQ54SF4
ModBaseiSearch...

Proteomic databases

PaxDbiQ54SF4

Genome annotation databases

EnsemblProtistsiEAL66109; EAL66109; DDB_G0282499
GeneIDi8623614
KEGGiddi:DDB_G0282499

Organism-specific databases

dictyBaseiDDB_G0282499

Phylogenomic databases

HOGENOMiCLU_313404_0_0_1
InParanoidiQ54SF4

Enzyme and pathway databases

ReactomeiR-DDI-913709, O-linked glycosylation of mucins

Miscellaneous databases

Protein Ontology

More...PROi		PR:Q54SF4

Family and domain databases

Gene3Di1.10.10.10, 1 hit
InterProiView protein in InterPro
IPR003316, E2F_WHTH_DNA-bd_dom
IPR036388, WH-like_DNA-bd_sf
IPR036390, WH_DNA-bd_sf
PfamiView protein in Pfam
PF02319, E2F_TDP, 1 hit
SMARTiView protein in SMART
SM01372, E2F_TDP, 1 hit
SUPFAMiSSF46785, SSF46785, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiY4797_DICDI
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q54SF4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 14, 2008
Last sequence update: January 19, 2010
Last modified: December 2, 2020
This is version 56 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Dictyostelium discoideum
    Dictyostelium discoideum: entries, gene names and cross-references to dictyBase
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