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Entry version 75 (13 Nov 2019)
Sequence version 1 (24 May 2005)
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Protein

Putative vacuolar protein sorting-associated protein 13D

Gene

vps13D

Organism
Dictyostelium discoideum (Slime mold)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Required for sorting signal-dependent recycling of membrane proteins between an endocytic compartment and the TGN.By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processProtein transport, Transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Putative vacuolar protein sorting-associated protein 13D
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:vps13D
ORF Names:DDB_G0286545
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDictyostelium discoideum (Slime mold)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri44689 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaAmoebozoaEvoseaEumycetozoaDictyostelidsDictyostelialesDictyosteliaceaeDictyostelium
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002195 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componentsi: Chromosome 4, Unassembled WGS sequence

Organism-specific databases

Dictyostelium discoideum online informatics resource

More...
dictyBasei
DDB_G0286545 vps13D

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Golgi apparatus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003659531 – 4592Putative vacuolar protein sorting-associated protein 13DAdd BLAST4592

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q54LN2

PRoteomics IDEntifications database

More...
PRIDEi
Q54LN2

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
44689.DDB0234205

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati2321 – 2354TPR 1Add BLAST34
Repeati3789 – 3822TPR 2Add BLAST34

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili437 – 517Sequence analysisAdd BLAST81

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi120 – 127Poly-Asn8
Compositional biasi129 – 134Poly-Ser6
Compositional biasi190 – 195Poly-Asn6
Compositional biasi291 – 300Poly-Asn10
Compositional biasi303 – 309Poly-Ser7
Compositional biasi717 – 728Poly-GlyAdd BLAST12
Compositional biasi831 – 838Poly-Ser8
Compositional biasi840 – 845Poly-Pro6
Compositional biasi1239 – 1246Poly-Glu8
Compositional biasi1487 – 1491Poly-Thr5
Compositional biasi1500 – 1505Poly-Lys6
Compositional biasi1702 – 1715Poly-GlnAdd BLAST14
Compositional biasi1856 – 1876Poly-AsnAdd BLAST21
Compositional biasi1981 – 2002Poly-ThrAdd BLAST22
Compositional biasi2037 – 2050Poly-SerAdd BLAST14
Compositional biasi2240 – 2267Poly-AsnAdd BLAST28
Compositional biasi2274 – 2278Poly-Lys5
Compositional biasi2640 – 2647Poly-Thr8
Compositional biasi2834 – 2840Poly-Gly7
Compositional biasi2875 – 2881Poly-Asn7
Compositional biasi2941 – 2947Poly-Gln7
Compositional biasi3028 – 3035Poly-Ser8
Compositional biasi3112 – 3128Poly-SerAdd BLAST17
Compositional biasi3281 – 3291Poly-AsnAdd BLAST11
Compositional biasi3364 – 3368Poly-Ser5
Compositional biasi3373 – 3380Poly-Thr8
Compositional biasi3624 – 3662Asn-richAdd BLAST39
Compositional biasi3870 – 3879Poly-Thr10
Compositional biasi3886 – 3894Poly-Asn9
Compositional biasi3905 – 3911Poly-Ser7
Compositional biasi4118 – 4125Poly-Gln8
Compositional biasi4173 – 4180Poly-Asn8
Compositional biasi4183 – 4188Poly-Lys6

Keywords - Domaini

Coiled coil, Repeat, TPR repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1809 Eukaryota
COG5043 LUCA

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q54LN2

KEGG Orthology (KO)

More...
KOi
K19527

Identification of Orthologs from Complete Genome Data

More...
OMAi
QDIYILA

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR026847 VPS13
IPR031645 VPS13_C
IPR026854 VPS13_N
IPR031646 VPS13_N2

The PANTHER Classification System

More...
PANTHERi
PTHR16166 PTHR16166, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF12624 Chorein_N, 1 hit
PF16908 VPS13, 1 hit
PF16909 VPS13_C, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q54LN2-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVFESVVAEV IDRFLGSFLQ EVGKKQLKIG VLNGNVVLKN IEVKPEAFKA
60 70 80 90 100
FDLPLSIDRG IVGKLTIKVP WTSLKSESVV VHLQDIYILA SSSSTNVSSN
110 120 130 140 150
YSSSDDDSSY HSDDDNSSSN NNNNNNNDSS SSSSNTTSTA SQLYDSSSEK
160 170 180 190 200
FLKFLKLDKK KPKKENSNGD LKSTNTTTNN NGINNSNDKN KNNNNIDSQN
210 220 230 240 250
DIEFDEESLN ELNVEVNGKK KKDGFKEKLI TKIINNLQVV IEKVHIRIEE
260 270 280 290 300
RKNNRNIAIG LCLDKLFVQS TDESWNPIFI DTMPTSTTSS NNNNNNNNNN
310 320 330 340 350
TTSSSSSSSI LNKLAKLSDL SIYINHDQEP MKNLPTKDLC QALRDSIPTS
360 370 380 390 400
KNTLSHHMFL DPLSANLCLK LHQSAGSIQS INKIEIESII EEIGLCLEPQ
410 420 430 440 450
QYSSLLSILE NISEFVNDIK EEKTQNNKSA FESILKKNAT IKLNKKDDKK
460 470 480 490 500
DDKKDDINSS SSSIGSSNSS NNTPTKDKNK EKEKDKEKEK EKEKKKEKEK
510 520 530 540 550
LKLEEKKKKK EEKGKSKSKD SKKNKIKGIE FEVEPQQLIT KSDSSDSLQS
560 570 580 590 600
LEKPSKELLK QQFYDTIGYV SPTSNSTTTN NSNNNSSSSP NILATSPSNN
610 620 630 640 650
SLSPMLISKP IQPKRIEKEL IMNFQIKTIH VKLLSDEPEK ELNKQATLIY
660 670 680 690 700
GDISNISFSL YKKADVMNLD SLIKSIKLSG LWVQNEQFPD MISSSTISEN
710 720 730 740 750
WLSFQMKMSP ILDSSSGVGV GVGGGGSGTT SPLQTIITTN GNGSGSKKKP
760 770 780 790 800
QSTPKNITIL IDVKPMFFVL NSAAILRYLQ LITPNHTIDL SGFSSGKKRP
810 820 830 840 850
LSRNKVTLSI IAQSPTVIIP ISSAENYNNQ SSSSSSSSQP PPPKPTEETS
860 870 880 890 900
TTNKPKKQQG ISFSENTVAI LDLGKISLEM LPSSPIGVND GNFSPSLPIP
910 920 930 940 950
SSSSNVEYQN FQISTMNIKS ILTKPPTLTG STTTLKFGKH HPSFKEDNKI
960 970 980 990 1000
ETYCNQRTEM DKILFETSLI VHMKKRKSDQ PDYENPKVIM NVNFPFVRFY
1010 1020 1030 1040 1050
FSPFSFYQIR LFVFQLMSEI QRVEEAFISS FQFKIRSNST TSPTFNSLNN
1060 1070 1080 1090 1100
KPSTLQNNHI DIENGNSSNN NNTDSPSKSK RQWLSTSNSN LSTMVNNLTE
1110 1120 1130 1140 1150
STGIGIGKEN EIIRKREIVF SSHVVFDDIN IIVTNLFNLS TIDVEPILHI
1160 1170 1180 1190 1200
KSDQLVSNLK VEKSNQRDTT VIGDYAFNDC NIYKCTNENQ RGGTNGHPSY
1210 1220 1230 1240 1250
TDDDIVISSN FNKFKSPKYF KNKRKEENEQ NEGNTEDDEQ EEEEQEKKPI
1260 1270 1280 1290 1300
IYGTIFHNKQ LVPTYEKLSD IKINLSTSYC NLIPQITGNI IEIIQMIVVV
1310 1320 1330 1340 1350
NRKVTQSVQR QLEEQRMRRP PSRFTVNKVL IYISVKGIKS ILMLPKLINT
1360 1370 1380 1390 1400
TTNTVATQQN NQQYKEEIIS RFDMKEVDLE ITKLPNRLIL DFFVDGFELY
1410 1420 1430 1440 1450
DLVNDFNTNL YNKVLSNYDD SNLLLTFKYE RISKIALPLV LLDADINRFQ
1460 1470 1480 1490 1500
ISLLPNFLNV LKDFILDLFQ FIPGLIKQQK KTNKELTTTT TINDGSNMEK
1510 1520 1530 1540 1550
YKKKKGIKIN ARMEAPLLII PENQLSRNQF IIDLGLLKIN NEFISNQTLS
1560 1570 1580 1590 1600
LFHFNLSNVN LKTIQFNNNR FKENLVLNNL RLNVEMTSIL VWKDNQNGIG
1610 1620 1630 1640 1650
VLPPPRLVLD VNLCDVVFKI NQNDIMFLMD RVSNLMLIIN STKSEFLNLK
1660 1670 1680 1690 1700
IKQEQQQEQE QQQDEELQKS INSKPPSPKL SLMSPLRKST TSPFKKFIPS
1710 1720 1730 1740 1750
SQQQQQQQQQ QQQQQSNSNL NRLVNKLPNQ QINQVEEILP IEEAPINKLN
1760 1770 1780 1790 1800
YGGSNGRMKL KLNLKIDSVR FYIEEIGSLF YIKDTKFKSD IGFDGYKQSI
1810 1820 1830 1840 1850
ISIGKIYLFF NQLHQLSFTI PIDKIIQDPN QYEQILSLKD NSVINTLEVN
1860 1870 1880 1890 1900
FSTLSNNNND NNNDNNNSNN SNNNNNTSNG SGNSLFKRMP IQSKENIHPF
1910 1920 1930 1940 1950
DSELNLTLRQ FQITVSLNFI SSILEFATPV IQKVLEFKKN KTATSTPNNN
1960 1970 1980 1990 2000
EINSLSNSSI ISDMTPLSLS TSSLDNTSIS TTTTTTTTTT TTTTTTTTTT
2010 2020 2030 2040 2050
STAKIPTISI GSNRRLKKQN SIVMPLINDN SNKSPTSKSS SSKSSSSKSS
2060 2070 2080 2090 2100
KKEQQQEKKS IKVKLVINVE SPQIVLMLNE DDAILIDLGK IHIENLFYFK
2110 2120 2130 2140 2150
TIKGIDLNYE SMEIQLSNLF VEIFQSSSYV GSSFEEFNQN LPDGCGDDSY
2160 2170 2180 2190 2200
RNKCHLLEDV SLVVNIDIVD DFQSYSKICS TSNHYNNNNA PLPIQKVNIH
2210 2220 2230 2240 2250
CKSVSFNISH QGYQLLLNIL INYMNCYKNS LEPILLLKKN FNNNNNNNNN
2260 2270 2280 2290 2300
NNNNNNNNNN NNNNNTNIIN NSSKKKKKQI LIDENGKEID IKTEITVQLS
2310 2320 2330 2340 2350
ELRFLMLLNH GMDKVRDQLA TLQINDLGAN IISIGNKSTS IKCFLRSIRL
2360 2370 2380 2390 2400
SDSRVDSGSK FIDLFCSKNI TTFQGPLKDS LTNINISGSF NNSSNQEEPL
2410 2420 2430 2440 2450
ITASIDIDKQ LNKLTLDVKI EKPRLHISPT IVFMMVGFFL EPYSKVKLEI
2460 2470 2480 2490 2500
KQLFSKTNNN NNNNNNNYNN TNSNNNNNQE EEEKDSISTK KKKIISLKTN
2510 2520 2530 2540 2550
IKKLKILLVE NPNSEVSNLV IVKMSIDASF DETMNGSSRI IGGSIKNFQM
2560 2570 2580 2590 2600
FSFRHSIANV SSSRAASLID PVTFDFGCNL LLIKSTCPSI EKSNLLIDVN
2610 2620 2630 2640 2650
ANIDQFNLFL SYHDILLIAL IIGQLKKEFP KLSKSSKKST TTTTTLTQKK
2660 2670 2680 2690 2700
LKNEKMINNV LTVKFNSPQF GLTLVNDYMD QNLPLIDLSF YRLDLLIQGT
2710 2720 2730 2740 2750
IGDEIKVTVD SKIVMDYFNI NKMAFEPLIE NWDIQLQMIK LNNQNSPNKP
2760 2770 2780 2790 2800
ATSIQLSSNQ FLNINASYGF AHSLLSTYHS IQYDLSTTLP IIMGLFKTKP
2810 2820 2830 2840 2850
EFSTFQLSSS PSLSSTQQPT RVFSPPTIST NLVGGGGSGG FKKSNSSSPL
2860 2870 2880 2890 2900
IRSSTIDSLN LAVSTSNNPN GSGYNNSNNN NGGGLSPDII LPISSTNRIR
2910 2920 2930 2940 2950
SGSLSQNPLG SVSTLVTSPN LTSNRLGFNT SPLLSQQQLK QQQQQQQLFN
2960 2970 2980 2990 3000
NSTLLRPIIQ PLPATVRSSP LLQTISIRKL TSSFHPYWII NKTGVNLEYT
3010 3020 3030 3040 3050
VRVLSGEQKG KKKSTSTSTS PTLSSQPSSS SSSSSQYTHA SFFLENEQKQ
3060 3070 3080 3090 3100
PISIENSKSL LTAKKTRDFR GFKDESLDQG PHITIKLSNH NKNVKNFVNN
3110 3120 3130 3140 3150
SVVNSNSSGY NSSSPSPSSS SSPSSSSSNP IPIGRVGYRL IQVGGKKLIF
3160 3170 3180 3190 3200
EVGWNEDGSK VITVRSNVLL KNTTTMNLEV KLINNQINTS NGGSLSSNNN
3210 3220 3230 3240 3250
NTPKEIKKIL FPNEELPVPL QYINSGKYLS ILPIGDSGEE FKHSNPFNDL
3260 3270 3280 3290 3300
IALDDNDIHS LYKILTCPKI IPKSPQIHMK NNNNSNGNNN NITPPTYNNV
3310 3320 3330 3340 3350
KLILLNSNYE KCVINSTDNS SVNDEINTEQ TLANLLPNEI NLRNDKSKLL
3360 3370 3380 3390 3400
RSTISKLPTS PQTSSSSSPP PATTTTSTTT KRTTINSTMS SFNNIYSQNI
3410 3420 3430 3440 3450
IKILSPLVIE NLLPCKIELT LYEGDIPLES STLESCQSVP FYTQDPRSSL
3460 3470 3480 3490 3500
YVKISGIPGF VDQKHLIVDC DRNNGSNGNK PIIKSKIKLE DPNKILKPLN
3510 3520 3530 3540 3550
IMISNREDQV EGVRKLALYS VYWIINKTGL PMIFEKPNFI PMLFADKESK
3560 3570 3580 3590 3600
IPQMIAKSKN SLKIEQGRKS KKQQQQHRHN HCTIDTMILY SSDLLYIKVP
3610 3620 3630 3640 3650
NSDWSNVFSL ETVGTDGIIH CFSNTNSNNS TNHHQDPFYS STFNNSSNDN
3660 3670 3680 3690 3700
INNGNSNNNT SNSLSPPSSS SSINLSKLKS NSDNREYNFR ASISMGKNKL
3710 3720 3730 3740 3750
QRTKMVTINF QYIFINKSSR RMLYRQIGQS YRIESIEPGE SKPFHWPNRH
3760 3770 3780 3790 3800
GEKLIQIKFD DDYYDWSGSF TIDDLAELTV KQRSLNLMEV PKPYLGRVDI
3810 3820 3830 3840 3850
KDNDTHTSIH FYDQDTEYSP FRIENQIPRS IKFYQIGTSI IDILPPYQSI
3860 3870 3880 3890 3900
DYIWDELLGT KILRLEISST TTTTTTTTTN STNDINNDNN NNNNQYIENH
3910 3920 3930 3940 3950
STFESSYSSS SVILDCNIMK IKNFKPIKIG TNTIYSFMKV DGPTRVLVLS
3960 3970 3980 3990 4000
YDQPKDDSSS ELSQTVENCK LDLQLSLPRI GVSLIDHNSK ELIYLSLNDI
4010 4020 4030 4040 4050
SLSFSLSNIF SRFELIVTNM QIDNQLMNTD YPVLFYHTNN SNNEEQDPKP
4060 4070 4080 4090 4100
FLHFSFIKNE EKKGLKYFEL LSLLIQEVNL MLDDSILASI IETITKIKQL
4110 4120 4130 4140 4150
DKNFKKHKKN QQLQQNPQQQ QPQQQNNEIQ NNPINSPFIL NDEKSKIQLL
4160 4170 4180 4190 4200
NDIEPISSDP LLLPTSNSAI SSNNNNNNNN LTKKKKKKSM IYIKLLLLNP
4210 4220 4230 4240 4250
IKVILSFSFV RDGFVGHSNS DFVGILLEVV GVSFGLDRTP LCLNALILEH
4260 4270 4280 4290 4300
PFLSERLFAS RIKSHYTMQS LNQLYKVIGS SDNIGNPVGL FNHIGTGVKD
4310 4320 4330 4340 4350
FFYEPALGLI TSPKDFGKGL AKGSISLVKN SVYGLFNTLS KLSNTVGKGV
4360 4370 4380 4390 4400
AILSFDDQYL RNRQRSRQKK AKHLGEGVVY GFKSLGKGVI DGVTGVVTKP
4410 4420 4430 4440 4450
IEGAIKGSIE GFAKGMAQGV VGVAVKPVVG VFDLVTMTTE GIRNTTNLFK
4460 4470 4480 4490 4500
DTTRMRPPRC FGTDNLLVEY NFEQSEGHYI LETTFKGRFK NSDTYIIHFN
4510 4520 4530 4540 4550
NGGVKNYITL ITNLRILLVK QIKNSYSFRW SSTFENIKSC EITPDGLLLH
4560 4570 4580 4590
FEHLQRIKSV DYRSQHCIHI TDPDQLSQLY LIIKEQILKI KK
Length:4,592
Mass (Da):516,270
Last modified:May 24, 2005 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD0742E11F67F7A76
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AAFI02000088 Genomic DNA Translation: EAL64174.1

NCBI Reference Sequences

More...
RefSeqi
XP_637675.1, XM_632583.1

Genome annotation databases

Ensembl protists genome annotation project

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EnsemblProtistsi
EAL64174; EAL64174; DDB_G0286545

Database of genes from NCBI RefSeq genomes

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GeneIDi
8625668

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ddi:DDB_G0286545

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AAFI02000088 Genomic DNA Translation: EAL64174.1
RefSeqiXP_637675.1, XM_632583.1

3D structure databases

Database of comparative protein structure models

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ModBasei
Search...

SWISS-MODEL Interactive Workspace

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SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi44689.DDB0234205

Proteomic databases

PaxDbiQ54LN2
PRIDEiQ54LN2

Genome annotation databases

EnsemblProtistsiEAL64174; EAL64174; DDB_G0286545
GeneIDi8625668
KEGGiddi:DDB_G0286545

Organism-specific databases

dictyBaseiDDB_G0286545 vps13D

Phylogenomic databases

eggNOGiKOG1809 Eukaryota
COG5043 LUCA
InParanoidiQ54LN2
KOiK19527
OMAiQDIYILA

Miscellaneous databases

Protein Ontology

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PROi
PR:Q54LN2

Family and domain databases

InterProiView protein in InterPro
IPR026847 VPS13
IPR031645 VPS13_C
IPR026854 VPS13_N
IPR031646 VPS13_N2
PANTHERiPTHR16166 PTHR16166, 1 hit
PfamiView protein in Pfam
PF12624 Chorein_N, 1 hit
PF16908 VPS13, 1 hit
PF16909 VPS13_C, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiVP13D_DICDI
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q54LN2
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 3, 2009
Last sequence update: May 24, 2005
Last modified: November 13, 2019
This is version 75 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Dictyostelium discoideum
    Dictyostelium discoideum: entries, gene names and cross-references to dictyBase
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