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Entry version 79 (26 Feb 2020)
Sequence version 1 (01 Nov 1996)
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Protein
Submitted name:

Tetrabrachion

Gene
N/A
Organism
Staphylothermus marinus
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
TetrabrachionImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiStaphylothermus marinusImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri2280 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiArchaeaCrenarchaeotaThermoproteiDesulfurococcalesDesulfurococcaceaeStaphylothermus

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei1495 – 1518HelicalSequence analysisAdd BLAST24

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q54436

Database of comparative protein structure models

More...
ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

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PDBe-KBi
Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...
EvolutionaryTracei
Q54436

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
ENOG410ZE0F LUCA

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
1.20.5.1060, 1 hit

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR021535 Tetrabrachion
IPR038065 Tetrabrachion_parallel_CC

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF11401 Tetrabrachion, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF58054 SSF58054, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q54436-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNRVLAYSLL AIMTLSLLII PAPGIAQRIT VGVSVKAGTY NFYNITPTTQ
60 70 80 90 100
TVEVTDNGML RVIINRTEAT ELGTTIRLAF ILDTDKYDPN VGGYFLNVSN
110 120 130 140 150
IGVYAPSDPT QSPYGGVIDI TQNSTLTDGT QVVGNVTVVN GGNNVIILID
160 170 180 190 200
LSKLPDLQNV VYITNVYTET STTANLTNTL LRVKAFDAAS WDAVISGNQF
210 220 230 240 250
KILYIPSLCK YVKINVIHSP AIVGTNVDVI VSFHKYFSLV QSIAGVSLDI
260 270 280 290 300
TVDNKTQLNM TNYYNATENY VLATFINGNL TVGGSEVFSS PTVTVINAST
310 320 330 340 350
FKYSGQVKDY APTVADTATP WVRTLNKFEV EFRHEIVNXT HDLIFYIHCD
360 370 380 390 400
SDTVSYDTWP FLIVNASLDI TTTEVAFNST TINPGDIVNF TAHNVPLQYL
410 420 430 440 450
TATNYGVLRF QLINPALVVY VPVSNMTLSA NTTTGIINGS FVLPDAPYGG
460 470 480 490 500
LDYLTYLVFN DGKFIANGYI TVSPCIETYV LTNTSAYAED AGSSYIGRFV
510 520 530 540 550
PGYTSVPGDY IVIKGYGFAL SNLTGFTVSI NNTDVIILNA TYNASTGKII
560 570 580 590 600
ILAKLLDTNG TPIPVGAGFI RVGQNGTTNI AYAPFNVTRN SGLEKVLFNP
610 620 630 640 650
RWFYNGTYYI EHDKLGDPYL YFPVDYPLVN NTFTTEMWPF NTTIEVIGWP
660 670 680 690 700
TNTFTLKAFN KEFNLSFNLL TLSLTNGYNM TNLYNLTIPF LPYGNYTLLE
710 720 730 740 750
GTLLSVNNRT VFTVHMGINV DLDSCGNGTL SITVVGAAPN TEYNFTFGYQ
760 770 780 790 800
VHDLNYGITR YISPQWNGTW NISLVTDIYG TGSTSVPLIT LYPTSYVINA
810 820 830 840 850
TWDVITWLRL SGSGTLDLLF SVDVSYNGFT DNLTTPITYV FGPSDTTPGS
860 870 880 890 900
FNIYVNTTYN VSVVRVAVDY LPRTNVVISV PETVLPGDTI TVQIFPHHNE
910 920 930 940 950
VWGFIEPTAL FDENQLLGWY LTVRLVDPLS NTVVERVAGY YAGNLIVEDV
960 970 980 990 1000
DGDGDNEVWF VVNLTAPLVL GVDKTYRVDV ELFLAVLNPS SNITGVTAVD
1010 1020 1030 1040 1050
NECYVQLDLN GTIYWNGLGS GIMLGGDGQI VTVLGVLEGK LDTIKDGIAE
1060 1070 1080 1090 1100
INATVNDINT YLKVNVTDLL KTINNSVVMI KNDTATLIIG QAEIKAKLDD
1110 1120 1130 1140 1150
LLNLTSQVND TVTMILACCN NASKVLNRME GTLNSTYTGV LNVKSDLSTL
1160 1170 1180 1190 1200
IDTANNVVIP KFNELYDNVT VEINASRDLI IQKISSVNDS LTTIISAGFN
1210 1220 1230 1240 1250
DVEAMISNLN TTLLNRIDEL EGTLLFYMTA NEQRLEGIIN ETADDIVYRL
1260 1270 1280 1290 1300
TVIIDDRYES LKNLITLRAD RLEMIINDNV STILASIGNV NLTVFNKLND
1310 1320 1330 1340 1350
LEIELGDVNA TINAGIFQIQ SNLGNANQLI LDTLTSSKVE ILNAISSNAS
1360 1370 1380 1390 1400
AISSEIHNAV NQLSTLVLQV NDTLTLKITG EADNILNFLS SLEGSMNTGF
1410 1420 1430 1440 1450
NNVTSTLSAV ENNILGKITD TSNLLSSKID NTLSTLQDLI TSTSNDLKNS
1460 1470 1480 1490 1500
ISSAKNDIVS SLSSKVDSST QTLSTKLDDL KSAQESNTNS INNNIMLFGA
1510 1520
ASLILLIVTI GLVGYRLIAR RRVG
Length:1,524
Mass (Da):166,280
Last modified:November 1, 1996 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i970F9499F7A5AF87
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
U57967 Genomic DNA Translation: AAC44118.1

Protein sequence database of the Protein Information Resource

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PIRi
S68553

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U57967 Genomic DNA Translation: AAC44118.1
PIRiS68553

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

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RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1FE6X-ray1.80A/B/C/D1238-1286[»]
1YBKX-ray1.45A/B/C/D1238-1287[»]
5JR5X-ray1.90A/B/C/D1238-1287[»]
5VH0X-ray2.06A/B/C/D1238-1287[»]
5VKFX-ray2.75A/B/C/D1238-1287[»]
6CRDX-ray2.57A/B/C/D/E/F/G/H1237-1285[»]
SMRiQ54436
ModBaseiSearch...
PDBe-KBiSearch...

Phylogenomic databases

eggNOGiENOG410ZE0F LUCA

Miscellaneous databases

EvolutionaryTraceiQ54436

Family and domain databases

Gene3Di1.20.5.1060, 1 hit
InterProiView protein in InterPro
IPR021535 Tetrabrachion
IPR038065 Tetrabrachion_parallel_CC
PfamiView protein in Pfam
PF11401 Tetrabrachion, 1 hit
SUPFAMiSSF58054 SSF58054, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ54436_STAMA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q54436
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: February 26, 2020
This is version 79 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources
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