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UniProtKB - Q54298 (Q54298_STRHY)

Entry version 96 (25 May 2022)
Sequence version 1 (01 Nov 1996)
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Protein
Submitted name:

Pipecolate incorporating enzyme

Gene

rapP

Organism
Streptomyces hygroscopicus
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: Antibiotic biosynthesis

This protein is involved in Antibiotic biosynthesis.ARBA annotation
View all proteins of this organism that are known to be involved in Antibiotic biosynthesis.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Pipecolate incorporating enzymeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rapPImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiStreptomyces hygroscopicusImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri1912 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Actinobacteria › Streptomycetales › Streptomycetaceae › Streptomyces › Streptomyces violaceusniger group

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei1037O-(pantetheine 4'-phosphoryl)serinePROSITE-ProRule annotation1

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - PTMi

PhosphopantetheinePROSITE-ProRule annotation

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1002 – 1077CarrierInterPro annotationAdd BLAST76

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1 – 41DisorderedSequence analysisAdd BLAST41
Regioni980 – 1005DisorderedSequence analysisAdd BLAST26

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi21 – 35Basic and acidic residuesSequence analysisAdd BLAST15

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		1.10.1200.10, 1 hit
3.30.300.30, 1 hit
3.30.559.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR010071, AA_adenyl_domain
IPR036736, ACP-like_sf
IPR025110, AMP-bd_C
IPR045851, AMP-bd_C_sf
IPR000873, AMP-dep_Synth/Lig
IPR023213, CAT-like_dom_sf
IPR001242, Condensatn
IPR009081, PP-bd_ACP

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00501, AMP-binding, 1 hit
PF13193, AMP-binding_C, 1 hit
PF00668, Condensation, 2 hits
PF00550, PP-binding, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF47336, SSF47336, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR01733, AA-adenyl-dom, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50075, CARRIER, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q54298-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASDSPRPRP LKPAFAVSRT QRQRRRLDER GISRADRNGP LPASFSQQRL 
        60         70         80         90        100
WLMQQVAPDS NSYNLPLVQR LRGALDTVIL RRALGLVASR HEALRTVFDA 
       110        120        130        140        150
EDGEPLQRIQ PADVVRLREL DARDEDHARA LVRRETAEPF DLHAGPVMRA 
       160        170        180        190        200
LLVRLADDDH VLALTVHHIA GDGWSLAILR MELSAQYAPL LRGAEADLPA 
       210        220        230        240        250
LPSQYADFAQ WERKALSGTK LQKRLDYWQE NLRDAPMVLG LPADRPRPPV 
       260        270        280        290        300
GSSDAGTVAW CPPTELVTAA KELSRSTGTT LFMSLLAAFQ VVLSHYARTD 
       310        320        330        340        350
DVLVGTPIAN RNHAEVEGLI GMFVNTVVLR GDLSGDPTFR ELLLRTRTNA 
       360        370        380        390        400
MGAFANAELP FDLLVEKVAP QRDLSVNPVV QVLFQLMPLA SNTFTLPGIA 
       410        420        430        440        450
VEPFDMNQFF TRMDLEFHVY EDPAGDRLTG EVWYSRALFD GPRIERMLDQ 
       460        470        480        490        500
FTLVLRSVLD NPDVPISQIS LAPEIGTDLP TVEANETDRD LPFDSLPELL 
       510        520        530        540        550
ADAAARNPDA IAVVDERVTL TYAELGGRAN KMAHLLRHKG VRPGELVGLC 
       560        570        580        590        600
VDRGADMIRG HARILKAGAG YVPIDPEHPI ERTRFGLDDS SISTGIAQET 
       610        620        630        640        650
YRTRFPDVRD IILPDDPGLE NQPASPPDVT TDRNSLAYAI YTSGSTGRPK 
       660        670        680        690        700
AVLMPGICVV NLLLWQERTM GREPASRTAQ FITATFDYSV QEIFSALLGG 
       710        720        730        740        750
TLVIPPDDIR LDPARLAQWI DDSRITRIYA PTTVLRALVE HVDPHGHGLV 
       760        770        780        790        800
DIASPLPGGE SLVLDGKLRE CALHRPHLRV HNHYGPAESQ LVTGYTLPED 
       810        820        830        840        850
VSAWPSTTPI GKPIDNTRIH LLDDALRPYP TAYAAQVCIS GIGLARGYLA 
       860        870        880        890        900
RPELTRQRFI TEGTGSEPRM YLSGDLARRL PDGNLEFLGR IDDQVKIRGI 
       910        920        930        940        950
RIELGEIETA LSEHAAITQA AVTVREDDRG DKRLVAYVVP HSDAGDLAVE 
       960        970        980        990       1000
LRGHVEARLP SYMVPSAFIV LDKLPLTTSG KTDRRALPAP ESWSPGPTSP 
      1010       1020       1030       1040       1050
VSPRNATEST VCGIYADVLE VQTVGVHDDF FALGGHSLLA SRAVSRIRAE 
      1060       1070       1080       1090       1100
LGCDLPLRTL FDVRTPALLA QAIGSMSSRD MPVLAPSPRT TPAPISLAQQ 
      1110       1120       1130       1140       1150
QLLGISDSLL DLGAFPVCPY GFRLRGEIDR TVLDTALTRI VARHEPLRTG 
      1160       1170       1180       1190       1200
FRDDGDGFVQ IVREPAPVRA EFIEVTGKDT TDREAAAAEI AKNELERPFD 
      1210       1220       1230       1240       1250
LVDGILLRAV LLRLEQDDHI LILMLHHIAG DGWSFDVLVR ELSALYAECR 
      1260       1270       1280       1290       1300
VPVAGLTEVG TTYSDFARWE HEALSGSIRE EHDAYWREHL KGAVALELPT 
      1310       1320       1330       1340       1350
DRPRKLADPI GKSLEWTVSP DATAAARRLA QAEGVTLYET MLGAFTLAAA 
      1360       1370       1380       1390       1400
GLSGLDDILV ATPFANRGRP EIDHLIGFFA KVAALRVDLS DDPTFREVLR 
      1410       1420       1430       1440       1450
RVQTAVLGAH AHQDLPYAAI QATATATATA TATATASELP PPLVQFQLIS 
      1460       1470       1480       1490       1500
SLTSDLVLPG TTIERFGMVE ADLGVGNGEL AIWLFDDDSA LHGTVVFDGS 
      1510       1520       1530       1540 
LFDPARIQSL LSSVESTLHV VSATPSVRVS KAYAANGHAR R
Length:1,541
Mass (Da):168,566
Last modified:November 1, 1996 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD80C6CEE0C1F2659
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
X86780 Genomic DNA Translation: CAA60461.1

Protein sequence database of the Protein Information Resource

More...PIRi		T30227

Genome annotation databases

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		ag:CAA60461

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X86780 Genomic DNA Translation: CAA60461.1
PIRiT30227

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

KEGGiag:CAA60461

Family and domain databases

Gene3Di1.10.1200.10, 1 hit
3.30.300.30, 1 hit
3.30.559.10, 2 hits
InterProiView protein in InterPro
IPR010071, AA_adenyl_domain
IPR036736, ACP-like_sf
IPR025110, AMP-bd_C
IPR045851, AMP-bd_C_sf
IPR000873, AMP-dep_Synth/Lig
IPR023213, CAT-like_dom_sf
IPR001242, Condensatn
IPR009081, PP-bd_ACP
PfamiView protein in Pfam
PF00501, AMP-binding, 1 hit
PF13193, AMP-binding_C, 1 hit
PF00668, Condensation, 2 hits
PF00550, PP-binding, 1 hit
SUPFAMiSSF47336, SSF47336, 1 hit
TIGRFAMsiTIGR01733, AA-adenyl-dom, 1 hit
PROSITEiView protein in PROSITE
PS50075, CARRIER, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ54298_STRHY
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q54298
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 25, 2022
This is version 96 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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