UniProtKB - Q52KE7 (CCNL1_MOUSE)

BLAST

>sp|Q52KE7|CCNL1_MOUSE Cyclin-L1 OS=Mus musculus OX=10090 GN=Ccnl1 PE=1 SV=1
MASGPHPTSTAAAAAAAAASASSAAPSAGGSSSGTTTTTTTTTGGILIGDRLYSEVSLTI
DHSLIPEERLSPTPSMQDGLDLPSETDLRILGCELIQAAGILLRLPQVAMATGQVLFHRF
FYSKSFVKHSFEIVAMACINLASKIEEAPRRIRDVINVFHHLRQLRGKRTPSPLILDQNY
INTKNQVIKAERRVLKELGFCVHVKHPHKIIVMYLQVLECERNQTLVQTAWNYMNDSLRT
NVFVRFQPETIACACIYLAARALQIPLPTRPHWFLLFGTTEEEIQEICIETLRLYTRKKP
NYELLEKEVEKRKVALQEAKLKAKGLNLDGTPALSTLGGFSPASKPSSPREVKAEEKSPV
SINVKTVKKEPEDRQQASKSPYNGVRKDSKRSRTSRSASRSRSRTRSRSRSHSPRRHYNN
RRSRSGTYSSRSRSRSRSHSESPRRHHNHGSPHLKAKHTREDLKSSNRHGHKRKKSRSRS
QSKTRDHSDVTKKHRHERGHHRDRRERSRSFERSHKGKHHGGSRSGHGRHRR

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History
Entry version 114 (07 Nov 2018)
Sequence version 1 (24 May 2005)
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Protein

Cyclin-L1

Gene

Ccnl1

Organism

Mus musculus (Mouse)

Status

Reviewed-Annotation score: -Experimental evidence at protein levelⁱ

Functionⁱ

Involved in pre-mRNA splicing. Functions in association with cyclin-dependent kinases (CDKs). May play a role in the regulation of RNA polymerase II (pol II). Inhibited by the CDK-specific inhibitor CDKN1A/p21.By similarity

GO - Molecular functionⁱ

cyclin-dependent protein serine/threonine kinase regulator activity
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635

View the complete GO annotation on QuickGO ...

GO - Biological processⁱ

positive regulation of cyclin-dependent protein serine/threonine kinase activity
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635
positive regulation of phosphorylation of RNA polymerase II C-terminal domain
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635
positive regulation of transcription by RNA polymerase II
Source: GO_Central
Inferred from biological aspect of ancestorⁱ
- 21873635
RNA processing Source: InterPro

View the complete GO annotation on QuickGO ...

Keywordsⁱ

Molecular function	Cyclin
Biological process	Transcription, Transcription regulation

Names & Taxonomyⁱ

Protein namesⁱ	Recommended name: Cyclin-L1 Short name: Cyclin-L Alternative name(s): Cyclin Ania-6a
Gene namesⁱ	Name:Ccnl1 Synonyms:Ania6a, Ccn1
Organismⁱ	Mus musculus (Mouse)
Taxonomic identifierⁱ	10090 [NCBI]
Taxonomic lineageⁱ	cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Dipnotetrapodomorpha › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Boreoeutheria › Euarchontoglires › Glires › Rodentia › Myomorpha › Muroidea › Muridae › Murinae › Mus › Mus
Proteomesⁱ	UP000000589 Componentⁱ: Chromosome 3

Organism-specific databases

MGIⁱ	MGI:1922664 Ccnl1

Keywords - Cellular componentⁱ

Cytoplasm, Nucleus

PTM / Processingⁱ

Molecule processing

Feature key	Position(s)	DescriptionActions	Graphical view	Length
ChainⁱPRO_0000080481	1 – 532	Cyclin-L1Add BLAST		532

Amino acid modifications

Feature key	Position(s)	DescriptionActions	Length
Modified residueⁱ	331	PhosphothreonineBy similarity	1
Modified residueⁱ	341	PhosphoserineCombined sources	1
Modified residueⁱ	344	PhosphoserineCombined sources	1
Cross-linkⁱ	345	Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Cross-linkⁱ	353	Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residueⁱ	358	PhosphoserineCombined sources	1
Modified residueⁱ	361	PhosphoserineBy similarity	1
Cross-linkⁱ	368	Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)By similarity
Modified residueⁱ	380	PhosphoserineBy similarity	1
Modified residueⁱ	451	PhosphoserineBy similarity	1

Keywords - PTMⁱ

Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

EPDⁱ	Q52KE7
PaxDbⁱ	Q52KE7
PeptideAtlas More...PeptideAtlasⁱ	Q52KE7
PRIDEⁱ	Q52KE7

PTM databases

iPTMnetⁱ	Q52KE7
PhosphoSitePlusⁱ	Q52KE7

Expressionⁱ

Tissue specificityⁱ

Widely expressed (at protein level).1 Publication

Gene expression databases

Bgeeⁱ	ENSMUSG00000027829 Expressed in 270 organ(s), highest expression level in cochlea
CleanExⁱ	MM_CCNL1
ExpressionAtlasⁱ	Q52KE7 baseline and differential
Genevisibleⁱ	Q52KE7 MM

Interactionⁱ

Subunit structureⁱ

Interacts with POLR2A via its hyperphosphorylated C-terminal domain (CTD) (By similarity). Interacts with CDK11A, CDK11B, CDK12 and CDK13. May form a ternary complex with CDK11B and casein kinase II (CKII). Interacts with pre-mRNA-splicing factors, including at least SRSF1, SRSF2 AND SRSF7/SLU7 (By similarity) (PubMed:17261272).By similarity1 Publication

Protein-protein interaction databases

ComplexPortalⁱ	CPX-351 Cyclin L1-CDK11B(p110) complex CPX-352 Cyclin L1-CDK11B(p58) complex
IntActⁱ	Q52KE7, 1 interactor
Molecular INTeraction database More...MINTⁱ	Q52KE7
STRINGⁱ	10090.ENSMUSP00000029416

Structureⁱ

3D structure databases

ProteinModelPortalⁱ	Q52KE7
SMRⁱ	Q52KE7
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Family & Domainsⁱ

Region

Feature key	Position(s)	DescriptionActions	Length
Regionⁱ	94 – 196	Cyclin-like 1Add BLAST	103
Regionⁱ	209 – 293	Cyclin-like 2Add BLAST	85
Regionⁱ	396 – 438	RSAdd BLAST	43

Domainⁱ

Contains a RS region (arginine-serine dipeptide repeat) within the C-terminal domain which is the hallmark of the SR family of splicing factors. This region probably plays a role in protein-protein interactions (By similarity).By similarity

Sequence similaritiesⁱ

Belongs to the cyclin family. Cyclin L subfamily.Curated

Keywords - Domainⁱ

Repeat

Phylogenomic databases

eggNOGⁱ	KOG0835 Eukaryota COG5333 LUCA
Ensembl GeneTree More...GeneTreeⁱ	ENSGT00760000119191
HOGENOMⁱ	HOG000231292
HOVERGENⁱ	HBG056044
InParanoidⁱ	Q52KE7
OMAⁱ	SWNFMND
Database of Orthologous Groups More...OrthoDBⁱ	EOG091G0BW9
PhylomeDBⁱ	Q52KE7
TreeFamⁱ	TF101011

Family and domain databases

Conserved Domains Database More...CDDⁱ	cd00043 CYCLIN, 2 hits
InterProⁱ	View protein in InterPro IPR013763 Cyclin-like IPR036915 Cyclin-like_sf IPR004367 Cyclin_C-dom IPR015431 Cyclin_L1 IPR006671 Cyclin_N
PANTHERⁱ	PTHR10026:SF64 PTHR10026:SF64, 1 hit
Pfam protein domain database More...Pfamⁱ	View protein in Pfam PF02984 Cyclin_C, 1 hit PF00134 Cyclin_N, 1 hit
SMARTⁱ	View protein in SMART SM00385 CYCLIN, 2 hits SM01332 Cyclin_C, 1 hit
SUPFAMⁱ	SSF47954 SSF47954, 2 hits

Sequences (2+)ⁱ

Sequence statusⁱ: Complete.

This entry describes 2 isoformsⁱ produced by alternative splicing. Align Add to basket

This entry has 2 described isoforms and 4 potential isoforms that are computationally mapped.Show all Align All

Isoform 1 (identifier: Q52KE7-1) [UniParc]FASTA Add to basket

Also known as: Cyclin L alpha

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MASGPHPTST AAAAAAAAAS ASSAAPSAGG SSSGTTTTTT TTTGGILIGD 
        60         70         80         90        100
RLYSEVSLTI DHSLIPEERL SPTPSMQDGL DLPSETDLRI LGCELIQAAG 
       110        120        130        140        150
ILLRLPQVAM ATGQVLFHRF FYSKSFVKHS FEIVAMACIN LASKIEEAPR 
       160        170        180        190        200
RIRDVINVFH HLRQLRGKRT PSPLILDQNY INTKNQVIKA ERRVLKELGF 
       210        220        230        240        250
CVHVKHPHKI IVMYLQVLEC ERNQTLVQTA WNYMNDSLRT NVFVRFQPET 
       260        270        280        290        300
IACACIYLAA RALQIPLPTR PHWFLLFGTT EEEIQEICIE TLRLYTRKKP 
       310        320        330        340        350
NYELLEKEVE KRKVALQEAK LKAKGLNLDG TPALSTLGGF SPASKPSSPR 
       360        370        380        390        400
EVKAEEKSPV SINVKTVKKE PEDRQQASKS PYNGVRKDSK RSRTSRSASR 
       410        420        430        440        450
SRSRTRSRSR SHSPRRHYNN RRSRSGTYSS RSRSRSRSHS ESPRRHHNHG 
       460        470        480        490        500
SPHLKAKHTR EDLKSSNRHG HKRKKSRSRS QSKTRDHSDV TKKHRHERGH 
       510        520        530 
HRDRRERSRS FERSHKGKHH GGSRSGHGRH RR

Note: Found in the nucleus, with a speckled pattern of expression.

Length:532

Mass (Da):60,133

Last modified:May 24, 2005 - v1

Checksum:ⁱECBE41C070D0CA18

Isoform 2 (identifier: Q52KE7-2) [UniParc]FASTA Add to basket

The sequence of this isoform differs from the canonical sequence as follows:
210-252: IIVMYLQVLE...FVRFQPETIA → VSCKVQTLQF...SFLLDVDICF
253-532: Missing.

« Hide

        10         20         30         40         50
MASGPHPTST AAAAAAAAAS ASSAAPSAGG SSSGTTTTTT TTTGGILIGD 
        60         70         80         90        100
RLYSEVSLTI DHSLIPEERL SPTPSMQDGL DLPSETDLRI LGCELIQAAG 
       110        120        130        140        150
ILLRLPQVAM ATGQVLFHRF FYSKSFVKHS FEIVAMACIN LASKIEEAPR 
       160        170        180        190        200
RIRDVINVFH HLRQLRGKRT PSPLILDQNY INTKNQVIKA ERRVLKELGF 
       210        220        230        240        250
CVHVKHPHKV SCKVQTLQFV SIRAFSEILN SVWRVKLTGV FKSFLLDVDI 

CF

Note: Found both in the nucleus and cytoplasm.

Show »

Length:252

Mass (Da):27,441

Checksum:ⁱ9643A9CC56E56E2B

Computationally mapped potential isoform sequencesⁱ

There are 4 potential isoforms mapped to this entry.BLAST Align Show all Add to basket

Entry	Entry name	Protein names	Gene names	Length	Annotation

F6WST0	F6WST0_MOUSE	Cyclin-L1 Cyclin-L1	Ccnl1	146	Annotation score:
F6WYR6	F6WYR6_MOUSE	Cyclin-L1 Cyclin-L1	Ccnl1	178	Annotation score:
F7BI63	F7BI63_MOUSE	Cyclin-L1 Cyclin-L1	Ccnl1	22	Annotation score:
F7BER3	F7BER3_MOUSE	Cyclin-L1 Cyclin-L1	Ccnl1	11	Annotation score:

Sequence cautionⁱ

The sequence AAD43568 differs from that shown. Reason: Frameshift at positions 29 and 51.Curated

Experimental Info

Feature key	Position(s)	DescriptionActions	Length
Sequence conflictⁱ	93 – 94	CE → WQ in AAL75565 (PubMed:11683997).Curated	2
Sequence conflictⁱ	147	E → G in BAB27744 (PubMed:16141072).Curated	1
Sequence conflictⁱ	283	E → G in BAB27744 (PubMed:16141072).Curated	1

Alternative sequence

Feature key	Position(s)	DescriptionActions	Graphical view	Length
Alternative sequenceⁱVSP_016126	210 – 252	IIVMY…PETIA → VSCKVQTLQFVSIRAFSEIL NSVWRVKLTGVFKSFLLDVD ICF in isoform 2. 1 PublicationAdd BLAST		43
Alternative sequenceⁱVSP_016127	253 – 532	Missing in isoform 2. 1 PublicationAdd BLAST		280

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AF159159 mRNA Translation: AAD43568.1 Frameshift. AF467251 mRNA Translation: AAL75565.1 AK051380 mRNA Translation: BAC34619.1 AK011629 mRNA Translation: BAB27744.3 BC094383 mRNA Translation: AAH94383.1
The Consensus CDS (CCDS) project More...CCDSⁱ	CCDS17390.1 [Q52KE7-1]
NCBI Reference Sequences More...RefSeqⁱ	NP_064321.2, NM_019937.3 [Q52KE7-1]
UniGeneⁱ	Mm.175612

Genome annotation databases

Ensemblⁱ	ENSMUST00000029416; ENSMUSP00000029416; ENSMUSG00000027829 [Q52KE7-1]
GeneIDⁱ	56706
KEGGⁱ	mmu:56706
UCSC genome browser More...UCSCⁱ	uc008pku.1 mouse [Q52KE7-1] uc008pkx.1 mouse [Q52KE7-2]

Keywords - Coding sequence diversityⁱ

Alternative splicing

Similar proteinsⁱ

90% Identity
50% Identity

Protein	Similar proteins		Species	Score	Length	Source
Q52KE7	Cyclin-L1		RAT		527	UniRef90_Q52KE7
cyclin-L1 isoform X1		MESAU		584
Uncharacterized protein		NEOLE		537
Cyclin L1		RABIT		529
Uncharacterized protein		MYOLU		527
+43

Protein	Similar proteins		Species	Score	Length	Source
Q52KE7	Isoform 3 of Cyclin-L2		HUMAN		298	UniRef50_Q96S94-3
Cyclin-L1		RAT		527
Cyclin-L1		CHICK		534
Cyclin-L2		MOUSE		518
Cyclin-L1		DANRE		498
+554
Q52KE7-2	Isoform 2 of Cyclin-L2		HUMAN		227	UniRef50_Q96S94-2
Uncharacterized protein		RHIBE		234
Uncharacterized protein		RHIRO		187
cyclin-L2 isoform X2		ERIEU		231
Uncharacterized protein		FELCA		230
+146

Cross-referencesⁱ

Sequence databases

Select the link destinations: EMBLⁱ GenBankⁱ DDBJⁱ Links Updated	AF159159 mRNA Translation: AAD43568.1 Frameshift. AF467251 mRNA Translation: AAL75565.1 AK051380 mRNA Translation: BAC34619.1 AK011629 mRNA Translation: BAB27744.3 BC094383 mRNA Translation: AAH94383.1
CCDSⁱ	CCDS17390.1 [Q52KE7-1]
RefSeqⁱ	NP_064321.2, NM_019937.3 [Q52KE7-1]
UniGeneⁱ	Mm.175612

3D structure databases

ProteinModelPortalⁱ	Q52KE7
SMRⁱ	Q52KE7
ModBaseⁱ	Search...
MobiDBⁱ	Search...

Protein-protein interaction databases

ComplexPortalⁱ	CPX-351 Cyclin L1-CDK11B(p110) complex CPX-352 Cyclin L1-CDK11B(p58) complex
IntActⁱ	Q52KE7, 1 interactor
MINTⁱ	Q52KE7
STRINGⁱ	10090.ENSMUSP00000029416

PTM databases

iPTMnetⁱ	Q52KE7
PhosphoSitePlusⁱ	Q52KE7

Proteomic databases

EPDⁱ	Q52KE7
PaxDbⁱ	Q52KE7
PeptideAtlasⁱ	Q52KE7
PRIDEⁱ	Q52KE7

Protocols and materials databases

Structural Biology Knowledgebase	Search...

Structural Biology Knowledgebase

Search...

Genome annotation databases

Ensemblⁱ	ENSMUST00000029416; ENSMUSP00000029416; ENSMUSG00000027829 [Q52KE7-1]
GeneIDⁱ	56706
KEGGⁱ	mmu:56706
UCSCⁱ	uc008pku.1 mouse [Q52KE7-1] uc008pkx.1 mouse [Q52KE7-2]

Organism-specific databases

CTDⁱ	57018
MGIⁱ	MGI:1922664 Ccnl1

Phylogenomic databases

eggNOGⁱ	KOG0835 Eukaryota COG5333 LUCA
GeneTreeⁱ	ENSGT00760000119191
HOGENOMⁱ	HOG000231292
HOVERGENⁱ	HBG056044
InParanoidⁱ	Q52KE7
OMAⁱ	SWNFMND
OrthoDBⁱ	EOG091G0BW9
PhylomeDBⁱ	Q52KE7
TreeFamⁱ	TF101011

Miscellaneous databases

Protein Ontology More...PROⁱ	PR:Q52KE7
SOURCEⁱ	Search...

Gene expression databases

Bgeeⁱ	ENSMUSG00000027829 Expressed in 270 organ(s), highest expression level in cochlea
CleanExⁱ	MM_CCNL1
ExpressionAtlasⁱ	Q52KE7 baseline and differential
Genevisibleⁱ	Q52KE7 MM

Family and domain databases

CDDⁱ	cd00043 CYCLIN, 2 hits
InterProⁱ	View protein in InterPro IPR013763 Cyclin-like IPR036915 Cyclin-like_sf IPR004367 Cyclin_C-dom IPR015431 Cyclin_L1 IPR006671 Cyclin_N
PANTHERⁱ	PTHR10026:SF64 PTHR10026:SF64, 1 hit
Pfamⁱ	View protein in Pfam PF02984 Cyclin_C, 1 hit PF00134 Cyclin_N, 1 hit
SMARTⁱ	View protein in SMART SM00385 CYCLIN, 2 hits SM01332 Cyclin_C, 1 hit
SUPFAMⁱ	SSF47954 SSF47954, 2 hits
ProtoNetⁱ	Search...

Entry informationⁱ

Entry nameⁱ	CCNL1_MOUSE
Accessionⁱ	Q52KE7Primary (citable) accession number: Q52KE7 Secondary accession number(s): Q8BQ75 , Q8R5H9, Q922K0, Q9CSZ3, Q9WV44
Entry historyⁱ	Integrated into UniProtKB/Swiss-Prot:	November 22, 2005
	Last sequence update:	May 24, 2005
	Last modified:	November 7, 2018
	This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusⁱ	Reviewed (UniProtKB/Swiss-Prot)
Annotation program	Chordata Protein Annotation Program

Miscellaneousⁱ

Keywords - Technical termⁱ

Complete proteome, Reference proteome

Documents

SIMILARITY comments
Index of protein domains and families
MGD cross-references
Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

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UniParc

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UniRef

Proteomes

Annotation systems

Supporting data

UniProtKB - Q52KE7 (CCNL1_MOUSE)

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Cyclin-L1

Ccnl1

Select a section on the left to see content.

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Nucleus

Nucleus

Other locations

Nucleus

Other locations

Keywords - Cellular componenti

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Amino acid modifications

Keywords - PTMi

Proteomic databases

PTM databases

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Region

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Keywords - Domaini

Phylogenomic databases

Family and domain databases

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

Experimental Info

Alternative sequence

Sequence databases

Genome annotation databases

Keywords - Coding sequence diversityi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

3D structure databases

Protein-protein interaction databases

PTM databases

Proteomic databases

Protocols and materials databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Miscellaneous databases

Gene expression databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Documents

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Functionⁱ

GO - Molecular functionⁱ

GO - Biological processⁱ

Names & Taxonomyⁱ

Subcellular locationⁱ

Keywords - Cellular componentⁱ

PTM / Processingⁱ

Keywords - PTMⁱ

Expressionⁱ

Interactionⁱ

Structureⁱ

Family & Domainsⁱ

Sequence similaritiesⁱ

Keywords - Domainⁱ

Sequence cautionⁱ

Keywords - Coding sequence diversityⁱ

Cross-referencesⁱ

Entry informationⁱ

Miscellaneousⁱ

Keywords - Technical termⁱ