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UniProtKB - Q52012 (Q52012_AGRFC)

Entry version 103 (25 May 2022)
Sequence version 2 (01 Aug 1998)
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Protein
Submitted name:

ABC transporter substrate-binding protein

Gene

accA

Organism
Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Complete GO annotation on QuickGO ...

Protein family/group databases

Transport Classification Database

More...TCDBi		3.A.1.5.4, the atp-binding cassette (abc) superfamily

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
ABC transporter substrate-binding proteinImported
Submitted name:
ABC transporter, substrate binding protein (Agrocinopines A and B)Imported
Submitted name:
AccAImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:accAImported
Ordered Locus Names:Atu6139Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid TiImported
Plasmid pTiC58Imported
Plasmid pTi_GV3101Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiAgrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens (strain C58))Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri176299 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Alphaproteobacteria › Hyphomicrobiales › Rhizobiaceae › Rhizobium/Agrobacterium group › Agrobacterium › Agrobacterium tumefaciens complex ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000813 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Plasmid Ti

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

PeriplasmARBA annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 24Sequence analysisAdd BLAST24
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_501410528625 – 521Sequence analysisAdd BLAST497

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Protein Data Bank in Europe - Knowledge Base

More...PDBe-KBi		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini84 – 426SBP_bac_5InterPro annotationAdd BLAST343

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the bacterial solute-binding protein 5 family.ARBA annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_017028_7_4_5

Identification of Orthologs from Complete Genome Data

More...OMAi		ANDAYWG

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR030678, Peptide/Ni-bd
IPR039424, SBP_5
IPR000914, SBP_5_dom
IPR006311, TAT_signal

The PANTHER Classification System

More...PANTHERi		PTHR30290, PTHR30290, 1 hit

Pfam protein domain database

More...Pfami		View protein in Pfam
PF00496, SBP_bac_5, 1 hit

PIRSF; a whole-protein classification database

More...PIRSFi		PIRSF002741, MppA, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51318, TAT, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q52012-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLKTNRRNFM MGTAAIAVAS TAGAKFTFAQ ERRALRLGVN GLPNSLEPVN 
        60         70         80         90        100
AISNVGPRIV NQIFDTLIAR DFFAKGAPGN AIDLVPALAE SWERIDEKSV 
       110        120        130        140        150
RFKLRQKVMF HDGVELTADD VAYTFSSERL WGPEAIKKIP LGKSYSLDFD 
       160        170        180        190        200
EPVVEDKYTV TLRTKTPSYL IETFVASWMS RIVPKEYYKK LGAVDFGNKP 
       210        220        230        240        250
VGTGPYKFVE FVAGDRVVLE ANDAYWGPKP TASKITYQIV AEPATRVAGL 
       260        270        280        290        300
ISGEYDIITT LTPDDIQLIN SYPDLETRGT LIENFHMFTF NMNQEVFKDK 
       310        320        330        340        350
KLRRALALAV NRPIMVEALW KKQASIPAGF NFPNYGETFD PKRKAMEYNV 
       360        370        380        390        400
EEAKRLVKES GYDGTPITYH TMGNYYANAM PALMMMIEMW KQIGVNVVMK 
       410        420        430        440        450
TYAPGSFPPD NQTWMRNWSN GQWMTDAYAT IVPEFGPNGQ VQKRWGWKAP 
       460        470        480        490        500
AEFNELCQKV TVLPNGKERF DAYNRMRDIF EEEAPAVILY QPYDVYAARK 
       510        520 
DVHWKPVSFE MMEFRNNLSF G
Length:521
Mass (Da):59,216
Last modified:August 1, 1998 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iADEADFFF6B1D5752
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AF010180 Genomic DNA Translation: AAC17197.1
AE007871 Genomic DNA Translation: AAK91103.1
KY000036 Genomic DNA Translation: ASK42673.1

Protein sequence database of the Protein Information Resource

More...PIRi		A48650
AI3244

NCBI Reference Sequences

More...RefSeqi		NP_396662.1, NC_003065.3
WP_010974902.1, NZ_AF010180.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		AAK91103; AAK91103; Atu6139
AYM09537; AYM09537; At1D1460_52960
KJX90192; KJX90192; SY94_5314
QCL98579; QCL98579; CFBP7129_30860

Database of genes from NCBI RefSeq genomes

More...GeneIDi		39477163

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		atu:Atu6139

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|176299.10.peg.5346
fig|358.66.peg.322

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF010180 Genomic DNA Translation: AAC17197.1
AE007871 Genomic DNA Translation: AAK91103.1
KY000036 Genomic DNA Translation: ASK42673.1
PIRiA48650
AI3244
RefSeqiNP_396662.1, NC_003065.3
WP_010974902.1, NZ_AF010180.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4RA1X-ray1.75A30-521[»]
4ZE8X-ray1.72A/B/C/D30-521[»]
4ZE9X-ray2.65A30-521[»]
4ZEBX-ray1.89A/B30-521[»]
4ZECX-ray2.15A32-521[»]
4ZEDX-ray1.75A30-521[»]
4ZEIX-ray2.30A30-521[»]
4ZEKX-ray2.09A30-521[»]
6I7WX-ray1.80A30-521[»]
ModBaseiSearch...
SWISS-MODEL-WorkspaceiSubmit a new modelling project...
PDBe-KBiSearch...

Protein family/group databases

TCDBi3.A.1.5.4, the atp-binding cassette (abc) superfamily

Genome annotation databases

EnsemblBacteriaiAAK91103; AAK91103; Atu6139
AYM09537; AYM09537; At1D1460_52960
KJX90192; KJX90192; SY94_5314
QCL98579; QCL98579; CFBP7129_30860
GeneIDi39477163
KEGGiatu:Atu6139
PATRICifig|176299.10.peg.5346
fig|358.66.peg.322

Phylogenomic databases

HOGENOMiCLU_017028_7_4_5
OMAiANDAYWG

Family and domain databases

InterProiView protein in InterPro
IPR030678, Peptide/Ni-bd
IPR039424, SBP_5
IPR000914, SBP_5_dom
IPR006311, TAT_signal
PANTHERiPTHR30290, PTHR30290, 1 hit
PfamiView protein in Pfam
PF00496, SBP_bac_5, 1 hit
PIRSFiPIRSF002741, MppA, 1 hit
PROSITEiView protein in PROSITE
PS51318, TAT, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ52012_AGRFC
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q52012
Secondary accession number(s): A0A2Z2PIR6, Q44446, Q7D2F4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: August 1, 1998
Last modified: May 25, 2022
This is version 103 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, PlasmidImported, Reference proteomeImported
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