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Protein

Retrotransposon Gag-like protein 6

Gene

Rtl6

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Miscellaneous

RTL6 is one of at least 11 genes called Mar or Mart related to long terminal repeat retrotransposons. They do not correspond to functional retrotransposons, but rather to neofunctionalized retrotransposons genes.2 Publications

Names & Taxonomyi

Protein namesi
Recommended name:
Retrotransposon Gag-like protein 6By similarity
Alternative name(s):
Mammalian retrotransposon-derived protein 61 Publication
Protein LDOC1LCurated
Protein Sushi-15E3
Gene namesi
Name:Rtl6By similarity
Synonyms:Ldoc1lCurated, Mar6, Mart61 Publication, Sushi-15E3
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 15

Organism-specific databases

MGIiMGI:2675858 Rtl6

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002890981 – 243Retrotransposon Gag-like protein 6Add BLAST243

Proteomic databases

PaxDbiQ505G4
PRIDEiQ505G4

PTM databases

iPTMnetiQ505G4
PhosphoSitePlusiQ505G4

Expressioni

Tissue specificityi

Widely expressed.1 Publication

Developmental stagei

Expressed at embryonic day E14.5.1 Publication

Gene expression databases

BgeeiENSMUSG00000055745 Expressed in 255 organ(s), highest expression level in ear vesicle
CleanExiMM_LDOC1L
GenevisibleiQ505G4 MM

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000069947

Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili29 – 69Sequence analysisAdd BLAST41

Sequence similaritiesi

Belongs to the LDOC1 family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiENOG410IVFE Eukaryota
ENOG4111DVS LUCA
GeneTreeiENSGT00510000047956
HOGENOMiHOG000113308
HOVERGENiHBG102708
InParanoidiQ505G4
OMAiLPTRARN
OrthoDBiEOG091G02TH
PhylomeDBiQ505G4
TreeFamiTF337113

Family and domain databases

InterProiView protein in InterPro
IPR032549 DUF4939
IPR032567 LDOC1-rel
PANTHERiPTHR15503 PTHR15503, 1 hit
PfamiView protein in Pfam
PF16297 DUF4939, 1 hit

Sequencei

Sequence statusi: Complete.

Q505G4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVQPRTSKTE SPASAPGASA QMDDVVDTLT SLRLTNSALR REASTLRAEK
60 70 80 90 100
ANLTNMLESV MAELTLLRTR ARIPGALQIT PPISAITSNG TRPMTTPPTS
110 120 130 140 150
LPEPFSGDPG QLAGFLMQMD RFMIFQASRF PGEAERVAFL VSRLTGEAEK
160 170 180 190 200
WAIPHMQPDS PLRNNYQGFL AELRRTYKSP LRHSRRAQIR KTSASNRAVR
210 220 230 240
ERERERQMLC RQLAAAGTGS CPVHPASNGT NPAPALPSRG RNL
Length:243
Mass (Da):26,660
Last modified:June 7, 2005 - v1
Checksum:iC4B0413B8CEFEC89
GO

Sequence cautioni

The sequence BAC39047 differs from that shown. Reason: Frameshift at position 39.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK083881 mRNA Translation: BAC39047.1 Sequence problems.
BC058638 mRNA Translation: AAH58638.2
BC094559 mRNA Translation: AAH94559.1
BN000778 Genomic DNA Translation: CAI99158.1 Sequence problems.
CCDSiCCDS37168.1
RefSeqiNP_808298.2, NM_177630.3
UniGeneiMm.6471

Genome annotation databases

EnsembliENSMUST00000069476; ENSMUSP00000069947; ENSMUSG00000055745
GeneIDi223732
KEGGimmu:223732
UCSCiuc007xcc.1 mouse

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK083881 mRNA Translation: BAC39047.1 Sequence problems.
BC058638 mRNA Translation: AAH58638.2
BC094559 mRNA Translation: AAH94559.1
BN000778 Genomic DNA Translation: CAI99158.1 Sequence problems.
CCDSiCCDS37168.1
RefSeqiNP_808298.2, NM_177630.3
UniGeneiMm.6471

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000069947

PTM databases

iPTMnetiQ505G4
PhosphoSitePlusiQ505G4

Proteomic databases

PaxDbiQ505G4
PRIDEiQ505G4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000069476; ENSMUSP00000069947; ENSMUSG00000055745
GeneIDi223732
KEGGimmu:223732
UCSCiuc007xcc.1 mouse

Organism-specific databases

CTDi84247
MGIiMGI:2675858 Rtl6

Phylogenomic databases

eggNOGiENOG410IVFE Eukaryota
ENOG4111DVS LUCA
GeneTreeiENSGT00510000047956
HOGENOMiHOG000113308
HOVERGENiHBG102708
InParanoidiQ505G4
OMAiLPTRARN
OrthoDBiEOG091G02TH
PhylomeDBiQ505G4
TreeFamiTF337113

Miscellaneous databases

PROiPR:Q505G4
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000055745 Expressed in 255 organ(s), highest expression level in ear vesicle
CleanExiMM_LDOC1L
GenevisibleiQ505G4 MM

Family and domain databases

InterProiView protein in InterPro
IPR032549 DUF4939
IPR032567 LDOC1-rel
PANTHERiPTHR15503 PTHR15503, 1 hit
PfamiView protein in Pfam
PF16297 DUF4939, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRTL6_MOUSE
AccessioniPrimary (citable) accession number: Q505G4
Secondary accession number(s): Q8BNE4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 29, 2007
Last sequence update: June 7, 2005
Last modified: September 12, 2018
This is version 68 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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Main funding by: National Institutes of Health

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