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Protein
Submitted name:

Uncharacterized protein

Gene

lsy-2

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:lsy-2Imported
ORF Names:CELE_F49H12.1Imported, F49H12.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiF49H12.1b ; CE38521 ; WBGene00003087 ; lsy-2

PTM / Processingi

Proteomic databases

EPDiQ4ZG90
PeptideAtlasiQ4ZG90

Expressioni

Gene expression databases

BgeeiWBGene00003087 Expressed in 5 organ(s), highest expression level in material anatomical entity

Structurei

3D structure databases

ProteinModelPortaliQ4ZG90
SMRiQ4ZG90
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini52 – 79C2H2-typeInterPro annotationAdd BLAST28
Domaini80 – 107C2H2-typeInterPro annotationAdd BLAST28
Domaini108 – 135C2H2-typeInterPro annotationAdd BLAST28
Domaini270 – 297C2H2-typeInterPro annotationAdd BLAST28

Keywords - Domaini

Zinc-fingerPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00920000149723
HOGENOMiHOG000017415
OrthoDBiEOG091G0BU0

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00096 zf-C2H2, 2 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 5 hits
SUPFAMiSSF57667 SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 5 hits
PS50157 ZINC_FINGER_C2H2_2, 4 hits

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q4ZG90-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTHGSNQSVY HHNQHMDDSE MMMDEQDYSQ YQMGFPEEDE MVEGMMTPRA
60 70 80 90 100
VHQCNVCNKI FVSYKGLQQH AVIHTDQKPF RCDICSKSFR FKSNLFEHRS
110 120 130 140 150
VHTGFTPHAC PYCGKTCRLK GNLKKHLRTH VTTKEELEAA WRPFASNRRP
160 170 180 190 200
PADIPDDAIV LRGAGGPYYT PPPRPKKKKL GLGEPEHWVD KLRRGDLLPQ
210 220 230 240 250
VELEDKIRRL EDTIFNNMSL ERWGNLFEIA KSIAFETHDC PVCKSQFMTR
260 270 280 290 300
MDCVSHHTLE HENHREGLEF FCEKCYRPFA DEASYNQHMS YHTRVSSLIE
310 320 330
TGEIVPQPAD PEILVPTNDE FQMLFGANFG QQMMEPQLI
Length:339
Mass (Da):39,363
Last modified:June 7, 2005 - v1
Checksum:i99DA58973667DA09
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
Q9N5S3Q9N5S3_CAEEL
Uncharacterized protein
lsy-2 CELE_F49H12.1, F49H12.1
365Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA Translation: CCD71576.1
RefSeqiNP_001024697.1, NM_001029526.2
UniGeneiCel.17425

Genome annotation databases

EnsemblMetazoaiF49H12.1b.1; F49H12.1b.1; WBGene00003087
F49H12.1b.2; F49H12.1b.2; WBGene00003087
GeneIDi180522
UCSCiF49H12.1a c. elegans

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284606 Genomic DNA Translation: CCD71576.1
RefSeqiNP_001024697.1, NM_001029526.2
UniGeneiCel.17425

3D structure databases

ProteinModelPortaliQ4ZG90
SMRiQ4ZG90
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

EPDiQ4ZG90
PeptideAtlasiQ4ZG90

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF49H12.1b.1; F49H12.1b.1; WBGene00003087
F49H12.1b.2; F49H12.1b.2; WBGene00003087
GeneIDi180522
UCSCiF49H12.1a c. elegans

Organism-specific databases

CTDi180522
WormBaseiF49H12.1b ; CE38521 ; WBGene00003087 ; lsy-2

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00920000149723
HOGENOMiHOG000017415
OrthoDBiEOG091G0BU0

Gene expression databases

BgeeiWBGene00003087 Expressed in 5 organ(s), highest expression level in material anatomical entity

Family and domain databases

InterProiView protein in InterPro
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00096 zf-C2H2, 2 hits
SMARTiView protein in SMART
SM00355 ZnF_C2H2, 5 hits
SUPFAMiSSF57667 SSF57667, 2 hits
PROSITEiView protein in PROSITE
PS00028 ZINC_FINGER_C2H2_1, 5 hits
PS50157 ZINC_FINGER_C2H2_2, 4 hits
ProtoNetiSearch...

Entry informationi

Entry nameiQ4ZG90_CAEEL
AccessioniPrimary (citable) accession number: Q4ZG90
Entry historyiIntegrated into UniProtKB/TrEMBL: June 7, 2005
Last sequence update: June 7, 2005
Last modified: October 10, 2018
This is version 114 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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