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Protein

Protein canopy homolog 1

Gene

Cnpy1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
Protein canopy homolog 1
Gene namesi
Name:Cnpy1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 5

Organism-specific databases

MGIiMGI:2442451 Cnpy1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003140161 – 94Protein canopy homolog 1Add BLAST94

Proteomic databases

PRIDEiQ4VAB4

Expressioni

Gene expression databases

BgeeiENSMUSG00000044681 Expressed in 82 organ(s), highest expression level in cerebellum lobe
CleanExiMM_CNPY1
ExpressionAtlasiQ4VAB4 baseline and differential
GenevisibleiQ4VAB4 MM

Family & Domainsi

Sequence similaritiesi

Belongs to the canopy family.Curated

Phylogenomic databases

GeneTreeiENSGT00390000009749
HOGENOMiHOG000111846
HOVERGENiHBG096844
InParanoidiQ4VAB4
OrthoDBiEOG091G0HOQ

Family and domain databases

InterProiView protein in InterPro
IPR021852 DUF3456
PfamiView protein in Pfam
PF11938 DUF3456, 1 hit

Sequences (2+)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q4VAB4-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MRMNDYQLED DPVTKQKYFR RYAPRKGDKI YKEYKKFFFY SDAFRPLKFA
60 70 80 90
CEAIIEKYED EIFELIAQEA NHLADMLCNE KSDLCGTPTN SPEP
Length:94
Mass (Da):11,249
Last modified:July 5, 2005 - v1
Checksum:i6963F745C7C0F911
GO
Isoform 2 (identifier: Q4VAB4-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     83-94: DLCGTPTNSPEP → GTVSDVTRAP...LTLPLIFRAG

Show »
Length:173
Mass (Da):20,152
Checksum:iBB00183DB84E3E45
GO

Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1C7CYV1A0A1C7CYV1_MOUSE
Protein canopy homolog 1
Cnpy1 9630008K15Rik, mCG_56335
145Annotation score:
A0A1C7ZMY8A0A1C7ZMY8_MOUSE
Protein canopy homolog 1
Cnpy1
9Annotation score:

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_03019383 – 94DLCGT…NSPEP → GTVSDVTRAPSLTYQLQLSL AQLIHRVAWLSYCQPGSTQT SGDQTPMPERRATEPHARAF LMTFLLCLCFFVFVCFPKNV GLTLPLIFRAG in isoform 2. 1 PublicationAdd BLAST12

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK035828 mRNA Translation: BAC29203.1
AK139155 mRNA Translation: BAE23904.1
BC096464 mRNA Translation: AAH96464.1
CCDSiCCDS80237.1 [Q4VAB4-1]
RefSeqiNP_001297440.1, NM_001310511.1 [Q4VAB4-1]
NP_001297441.1, NM_001310512.1 [Q4VAB4-1]
UniGeneiMm.381479
Mm.397323
Mm.68286

Genome annotation databases

EnsembliENSMUST00000117098; ENSMUSP00000113956; ENSMUSG00000044681 [Q4VAB4-2]
ENSMUST00000118882; ENSMUSP00000113944; ENSMUSG00000044681 [Q4VAB4-1]
ENSMUST00000120068; ENSMUSP00000112773; ENSMUSG00000044681 [Q4VAB4-2]
GeneIDi269637
KEGGimmu:269637
UCSCiuc008wtw.1 mouse [Q4VAB4-1]
uc008wtx.1 mouse [Q4VAB4-2]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK035828 mRNA Translation: BAC29203.1
AK139155 mRNA Translation: BAE23904.1
BC096464 mRNA Translation: AAH96464.1
CCDSiCCDS80237.1 [Q4VAB4-1]
RefSeqiNP_001297440.1, NM_001310511.1 [Q4VAB4-1]
NP_001297441.1, NM_001310512.1 [Q4VAB4-1]
UniGeneiMm.381479
Mm.397323
Mm.68286

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ4VAB4

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000117098; ENSMUSP00000113956; ENSMUSG00000044681 [Q4VAB4-2]
ENSMUST00000118882; ENSMUSP00000113944; ENSMUSG00000044681 [Q4VAB4-1]
ENSMUST00000120068; ENSMUSP00000112773; ENSMUSG00000044681 [Q4VAB4-2]
GeneIDi269637
KEGGimmu:269637
UCSCiuc008wtw.1 mouse [Q4VAB4-1]
uc008wtx.1 mouse [Q4VAB4-2]

Organism-specific databases

CTDi285888
MGIiMGI:2442451 Cnpy1

Phylogenomic databases

GeneTreeiENSGT00390000009749
HOGENOMiHOG000111846
HOVERGENiHBG096844
InParanoidiQ4VAB4
OrthoDBiEOG091G0HOQ

Miscellaneous databases

PROiPR:Q4VAB4
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000044681 Expressed in 82 organ(s), highest expression level in cerebellum lobe
CleanExiMM_CNPY1
ExpressionAtlasiQ4VAB4 baseline and differential
GenevisibleiQ4VAB4 MM

Family and domain databases

InterProiView protein in InterPro
IPR021852 DUF3456
PfamiView protein in Pfam
PF11938 DUF3456, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiCNPY1_MOUSE
AccessioniPrimary (citable) accession number: Q4VAB4
Secondary accession number(s): Q8CBK9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 5, 2005
Last modified: November 7, 2018
This is version 73 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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Main funding by: National Institutes of Health

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