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Protein

mRNA 3'-end-processing protein YTH1

Gene

YTH1

Organism
Ustilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Component of the cleavage factor I (CF I) involved in pre-mRNA 3'-end processing.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri60 – 88C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri104 – 131C3H1-type 2PROSITE-ProRule annotationAdd BLAST28
Zinc fingeri132 – 160C3H1-type 3PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri161 – 188C3H1-type 4PROSITE-ProRule annotationAdd BLAST28
Zinc fingeri190 – 212C3H1-type 5PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri321 – 338CCHC-typePROSITE-ProRule annotationAdd BLAST18

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-binding
Biological processmRNA processing
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
mRNA 3'-end-processing protein YTH1
Gene namesi
Name:YTH1
ORF Names:UMAG_05429
OrganismiUstilago maydis (strain 521 / FGSC 9021) (Corn smut fungus)
Taxonomic identifieri237631 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaBasidiomycotaUstilaginomycotinaUstilaginomycetesUstilaginalesUstilaginaceaeUstilago
Proteomesi
  • UP000000561 Componentsi: Chromosome 19, Unassembled WGS sequence

Organism-specific databases

EuPathDBiFungiDB:UMAG_05429

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002385431 – 366mRNA 3'-end-processing protein YTH1Add BLAST366

Proteomic databases

PRIDEiQ4P384

Interactioni

Protein-protein interaction databases

STRINGi5270.UM05429P0

Structurei

3D structure databases

ProteinModelPortaliQ4P384
SMRiQ4P384
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the CPSF4/YTH1 family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri60 – 88C3H1-type 1PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri104 – 131C3H1-type 2PROSITE-ProRule annotationAdd BLAST28
Zinc fingeri132 – 160C3H1-type 3PROSITE-ProRule annotationAdd BLAST29
Zinc fingeri161 – 188C3H1-type 4PROSITE-ProRule annotationAdd BLAST28
Zinc fingeri190 – 212C3H1-type 5PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri321 – 338CCHC-typePROSITE-ProRule annotationAdd BLAST18

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

HOGENOMiHOG000212457
InParanoidiQ4P384
KOiK14404
OMAiANKCTKG
OrthoDBiEOG092C59NU

Family and domain databases

InterProiView protein in InterPro
IPR000571 Znf_CCCH
IPR036855 Znf_CCCH_sf
IPR001878 Znf_CCHC
IPR036875 Znf_CCHC_sf
PfamiView protein in Pfam
PF00642 zf-CCCH, 1 hit
PF00098 zf-CCHC, 1 hit
SMARTiView protein in SMART
SM00343 ZnF_C2HC, 1 hit
SM00356 ZnF_C3H1, 5 hits
SUPFAMiSSF57756 SSF57756, 1 hit
SSF90229 SSF90229, 3 hits
PROSITEiView protein in PROSITE
PS50103 ZF_C3H1, 5 hits
PS50158 ZF_CCHC, 1 hit

Sequencei

Sequence statusi: Complete.

Q4P384-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNAPLTLHRS GAGPSSYSSH RPLITQQRLV GASSSIPSQF IHNEFSFEQY
60 70 80 90 100
IKDHLNVKLD NDAQICPDYS ERLQCPRGAS CPRRHVRPSH LNFLPAGSTA
110 120 130 140 150
LRDPNKRTVC KHWLRGLCKK DDQCDYLHEY DMRRIPECRF YATFGFCNSG
160 170 180 190 200
DDCLYLHVDP AIKRRECERY NRGFCPKGPL CTKKHVRRVA CPLYLAGFCP
210 220 230 240 250
EGLDCPRGHV KSTPASSASR SNSPIQTHRP LTAAEAFGTG TGRGDEYGDG
260 270 280 290 300
AGMRNQRAPA GRYGLPSGGA AGGAGAADIG ASRGGMGYAN NMQRRPNNVF
310 320 330 340 350
GAPAQGAQEG GRGWRKDLSE VLCFKCGEMG HFANMCPNPA LPGNRGGVER
360
GPGGQARQAR DRPRPY
Length:366
Mass (Da):39,993
Last modified:July 19, 2005 - v1
Checksum:iF951ADBEEF7C4DAA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CM003158 Genomic DNA Translation: KIS66435.1
RefSeqiXP_011392115.1, XM_011393813.1

Genome annotation databases

EnsemblFungiiKIS66435; KIS66435; UMAG_05429
GeneIDi23565329
KEGGiuma:UMAG_05429

Similar proteinsi

Entry informationi

Entry nameiYTH1_USTMA
AccessioniPrimary (citable) accession number: Q4P384
Secondary accession number(s): A0A0D1DV56
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 30, 2006
Last sequence update: July 19, 2005
Last modified: May 23, 2018
This is version 74 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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