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Entry version 52 (07 Apr 2021)
Sequence version 1 (02 Aug 2005)
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Protein
Submitted name:

Conjugative transfer oriT nicking-unwinding protein

Gene

traI

Organism
Salmonella dublin
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Conjugative transfer oriT nicking-unwinding proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:traIImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid pOU1113Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSalmonella dublinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri98360 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeSalmonella

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini11 – 282TrwCInterPro annotationAdd BLAST272
Domaini574 – 626ssDNA_TraI_NInterPro annotationAdd BLAST53
Domaini632 – 711TraI_2BInterPro annotationAdd BLAST80
Domaini1430 – 1552TraIInterPro annotationAdd BLAST123

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni62 – 81DisorderedSequence analysisAdd BLAST20
Regioni1687 – 1753DisorderedSequence analysisAdd BLAST67

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi1687 – 1717PolyampholyteSequence analysisAdd BLAST31

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR014059, Conjug_relaxase_N
IPR014129, Conjug_relaxase_TraI
IPR009767, DNA_helicase_TraI
IPR027417, P-loop_NTPase
IPR040668, TraI_2B
IPR040987, TraI_N
IPR014862, TrwC

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF18272, ssDNA_TraI_N, 1 hit
PF07057, TraI, 1 hit
PF18340, TraI_2B, 1 hit
PF08751, TrwC, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540, SSF52540, 2 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR02686, relax_trwC, 1 hit
TIGR02760, TraI_TIGR, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q4L1U0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MMSIAQVRSA GSAAGYYSDR DNYYVLGSLE ERWAGKGAEQ LGVQGTVDKE
60 70 80 90 100
VFTRVLEGRL PDGADLSRQQ DGGNKHRPGY DLTFSAPKSV SLIAMLAGDK
110 120 130 140 150
RLTEAHNQAV DIAVRQVEAL ASTRVMTDGQ SETVLTGNLV MALFNHDTSR
160 170 180 190 200
DQEPQLHTHA VVANVTLHDG EWKTLSSDKV GKTGFIENVY ANQIAFGKIY
210 220 230 240 250
RAVLKEKVEA LGYETEVVGK HGMWEMPGVP VEAFSSRSQA IREAVGEDAS
260 270 280 290 300
LKSRDVAALD TRKSKQHVDP EVKMAEWMQT LKDTGFDISA YREAADRRPE
310 320 330 340 350
IQAAQPVPSQ EQPDIQQAVT QAIAGLSDRK VQFTYTDVLA RTVGMLPPEA
360 370 380 390 400
GVIEKARAGI DEAISRERLI PLDREKGLFT SGIHVLDELS VRALSSDIMK
410 420 430 440 450
QNRVTVHPEK SVPRTGSYSD AVSVLAQDRP SLAIISGQGS AAGQRERVAE
460 470 480 490 500
LTMMAREQGR EVQIIAADRR SQTNLKQDER LSGELITGRR QLQEGMSFSP
510 520 530 540 550
GSTVIVDQGE KLSLKETLTL LDGAARHNIQ VLITDSGQRT GTGSALMAMK
560 570 580 590 600
EAGVNSYRWQ GGQQTPATVI SEPDRNVRYA RLAGDFVAAV KAGEESVAQV
610 620 630 640 650
SGVREQAILA GMIRSELKTQ GVLGQQDTMM TALSPVWLDS RNRYLRDMYR
660 670 680 690 700
EGMVMEQWNP EKRSHDRYVI DRVTAQSHSL TLRDAQGETQ MVRISALDSS
710 720 730 740 750
WSLFRPEKIP VADGERLMVT GKIPGLRVSG GDRLQVSAVN DGMMTVIVPG
760 770 780 790 800
RAEPASLPVG DSPFTALKLE NGWVETPGHS VSDSAKVFVS VTQMAMDNAT
810 820 830 840 850
LNGLARSGRD VRLYSSLDEP RTAEKLSRHP SFTVVSEQIK ARAGEVSLET
860 870 880 890 900
AISRQKAGLH TPAQQPIHLA LPVVESKNLA FSQVELLTEA KSFAAEGTGF
910 920 930 940 950
AELGREIDAQ IKRGDLLHVD VAKGYGTDLL ISRASYDAEK SILHHILEGK
960 970 980 990 1000
EAVTPLMERV SGELMETLTS GQRAATRMIL ETKDRFTVVQ GYAGVGKTTQ
1010 1020 1030 1040 1050
FRAVMSAVNL LPGSERPRVV GLGPTHRAVG EMRSAGVEAQ TLASFLHDTQ
1060 1070 1080 1090 1100
LQQRSGETPD FSNTLFLLDE SSMVGNTDMA RAYALIAAGG GRAVASGDTD
1110 1120 1130 1140 1150
QLQAIAPGQP FRLQQTRSAA DVAIMKEIVR QTPELRDAVY SLINRDVNKA
1160 1170 1180 1190 1200
LSGFENVKAG SGSPPEGAWC PENSVTEFSR LQERELVKAA QEAEKKGEAF
1210 1220 1230 1240 1250
PDVLVTLYEA IVRDYTGRTP DAREQTLIVT HLNEDRRVLN SMIQDALAKP
1260 1270 1280 1290 1300
GEQQVTVPVL TTANIRDGEL RRLSTWENHQ CALALVDKVY HRIAGISKED
1310 1320 1330 1340 1350
GLITLQDADG NTRLISPREA AAEGVTLYNP ETIRVGAGDR MRFTKSDRER
1360 1370 1380 1390 1400
GYVANSVWPV TAVSGDGVTL SDGKQTRVVR PGQDRAEQHI DLAYAITAHG
1410 1420 1430 1440 1450
AQGASETFAI ALEGTEGGRK QMAGFESAYV ALSRMKQHVQ VYTDDRQGWT
1460 1470 1480 1490 1500
DAINRAAQKG TAHDVLEPKA DREAMNAERL FSTARELRDV AAGRAVLRNA
1510 1520 1530 1540 1550
GLALGDSRAR FIAPGRKYPQ PYVALPAFDR NGKSAGIWLN PLTTDDGAGL
1560 1570 1580 1590 1600
RGFSGEGRVK GSEEAQFVAL QGSRNGESLL ADNMQEGVRI ARDNPDSGVV
1610 1620 1630 1640 1650
VRIAGDGRPW NPGAITGGRV WGDIPDSSVQ PGAVNGEPVT AEILAQRQAE
1660 1670 1680 1690 1700
EAVRRETEQR AAEIVRKMAE DKPDLPEEKT AQAVREIAGQ EHDRMTPPER
1710 1720 1730 1740 1750
ETPLPESVLR EPVRERETIP GSGAGKPGSG AAAADGAGDG ASTCRKREPP

DGD
Length:1,753
Mass (Da):190,218
Last modified:August 2, 2005 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i48D6E778AFDB67F9
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AY517905 Genomic DNA Translation: AAY88101.1

NCBI Reference Sequences

More...
RefSeqi
WP_011282394.1, NC_007208.1
YP_271768.1, NC_007208.1

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY517905 Genomic DNA Translation: AAY88101.1
RefSeqiWP_011282394.1, NC_007208.1
YP_271768.1, NC_007208.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Family and domain databases

InterProiView protein in InterPro
IPR014059, Conjug_relaxase_N
IPR014129, Conjug_relaxase_TraI
IPR009767, DNA_helicase_TraI
IPR027417, P-loop_NTPase
IPR040668, TraI_2B
IPR040987, TraI_N
IPR014862, TrwC
PfamiView protein in Pfam
PF18272, ssDNA_TraI_N, 1 hit
PF07057, TraI, 1 hit
PF18340, TraI_2B, 1 hit
PF08751, TrwC, 1 hit
SUPFAMiSSF52540, SSF52540, 2 hits
TIGRFAMsiTIGR02686, relax_trwC, 1 hit
TIGR02760, TraI_TIGR, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ4L1U0_SALDU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q4L1U0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: August 2, 2005
Last sequence update: August 2, 2005
Last modified: April 7, 2021
This is version 52 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

PlasmidImported
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