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Entry version 73 (19 Jan 2022)
Sequence version 1 (02 Aug 2005)
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Protein
Submitted name:

Type VI secretion protein TssM

Gene

tssM

Organism
Pseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Type VI secretion protein TssMImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:tssMImported
Ordered Locus Names:PFL_6081Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPseudomonas fluorescens (strain ATCC BAA-477 / NRRL B-23932 / Pf-5)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri220664 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000008540 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei7 – 29HelicalSequence analysisAdd BLAST23
Transmembranei41 – 61HelicalSequence analysisAdd BLAST21
Transmembranei440 – 462HelicalSequence analysisAdd BLAST23

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
220664.PFL_6081

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini190 – 447IcmF-related_NInterPro annotationAdd BLAST258
Domaini500 – 792IcmF-relatedInterPro annotationAdd BLAST293
Domaini1043 – 1149IcmF_CInterPro annotationAdd BLAST107

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili88 – 111Sequence analysisAdd BLAST24

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG3523, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_003353_2_1_6

Identification of Orthologs from Complete Genome Data

More...
OMAi
GRQPING

Database of Orthologous Groups

More...
OrthoDBi
393769at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR009612, IcmF-related
IPR025743, IcmF-related_N_dom
IPR010623, IcmF_C
IPR027417, P-loop_NTPase
IPR017731, TssM1-like

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF06761, IcmF-related, 1 hit
PF14331, IcmF-related_N, 1 hit
PF06744, IcmF_C, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540, SSF52540, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR03348, VI_IcmF, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q4K3P4-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKAFFSFVIR WVIPLLGLIA LSLIIWFIGP LLEFLVPEGR RWALIIFIFA
60 70 80 90 100
LWIGYRVFCI IQARRNAAKV LQSLAADTPP DPDSVATAEE LAALRQRMDE
110 120 130 140 150
ALALLKKAKL GGDERRNLYE LPWYVIIGPP GSGKTTALVN SGLHFPLAAQ
160 170 180 190 200
LGAGAVRGVG GTRNCDWWFT DQAVLLDTAG RYTTQDSHAT VDKAAWLGFL
210 220 230 240 250
DLLKTQRSRR PIDGAFVAIS LSDLLLGSEA ERAAHAAAIR LRIQELYTQL
260 270 280 290 300
GVRFPIYLML TKLDLVPGFM EFFDSLSKEE RAQVWGMTFA LDDGKSGDSP
310 320 330 340 350
LAHLPAELAA LEQRLNERLV ERLQQERDPA RRDLIYGFPQ QFAALKESLQ
360 370 380 390 400
SFLEGVFKPN AFEERVLLRG VYFTSGTQEG SPIDRLIGAM AQSMNLDRQH
410 420 430 440 450
LARQTGTGRS YFIEKLFSAV AFAERGLVGV NPKVERRRKW IARGALAGTV
460 470 480 490 500
ALVLVVSTLW IISYRANQAY IAQVDQRVGP VRQDVQNLSP AQRDVLAVLP
510 520 530 540 550
LLNATRHLAG DAPGWAEGLG LYQGDMLEAE SASVYRKLLV AVFAPRLMTR
560 570 580 590 600
IEEQLHSGGN SDFLYEGLKA YLMLADSEHY DPDFIKAWIT LDWDHTLARD
610 620 630 640 650
LPPEQRQALT GHLQALFEKH PPNARLDQRL IDDLRRQLQQ LPVAQRVYDR
660 670 680 690 700
VKRAKLPDGV PDFRLSEAGG RDAALVFTRK SGKPLSEPLS GLFTAKGYRQ
710 720 730 740 750
GFLLASLNQA GTLAEEQWVL GRDQADQQNV ASLAADVRRL YFQDYLRQWD
760 770 780 790 800
ALLADIDFVP ITSVAQAADV LRILSGPTSP LKKLLVAVAK ETDLQQEERL
810 820 830 840 850
LAAQGQKVEG GVDQLKQRLG NLLGQEQSAN PAAVASSEDP VSAHFAELNS
860 870 880 890 900
LVSKGEGEPA AIDGLLADMN ALYVQVSAMV GASGDALLGE AKNQASAAAA
910 920 930 940 950
RVSLTAERQP PVVQGLVKSV VGSTTNTMMG GVRNQLNAAW VSEVVNVYRQ
960 970 980 990 1000
SLSGRYPMSP GSSRDATLED FGQFFGTGGV MDNYFRKYLQ PYVNTSTTTW
1010 1020 1030 1040 1050
SWQPGAAQKL GISPGVLQTF QRASNIRDAF FRSSGGTQPA VRFELKPVAM
1060 1070 1080 1090 1100
DANISQFLLD LDGQQLSYDH GPSRPVAMQW PNPGSIGVVR LSIMPPSATG
1110 1120 1130 1140 1150
RSGITLDGPW AWFRLLEQSD LTATNSPDRF NLRLRVDGAS ISYELRASSA
1160
FNPFKSRVLS GFSLPERL
Length:1,168
Mass (Da):128,580
Last modified:August 2, 2005 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iF3F8138F38456F0E
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP000076 Genomic DNA Translation: AAY95269.1

NCBI Reference Sequences

More...
RefSeqi
WP_011064249.1, NC_004129.6

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
AAY95269; AAY95269; PFL_6081

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
pfl:PFL_6081

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|220664.5.peg.6208

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000076 Genomic DNA Translation: AAY95269.1
RefSeqiWP_011064249.1, NC_004129.6

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi220664.PFL_6081

Genome annotation databases

EnsemblBacteriaiAAY95269; AAY95269; PFL_6081
KEGGipfl:PFL_6081
PATRICifig|220664.5.peg.6208

Phylogenomic databases

eggNOGiCOG3523, Bacteria
HOGENOMiCLU_003353_2_1_6
OMAiGRQPING
OrthoDBi393769at2

Family and domain databases

InterProiView protein in InterPro
IPR009612, IcmF-related
IPR025743, IcmF-related_N_dom
IPR010623, IcmF_C
IPR027417, P-loop_NTPase
IPR017731, TssM1-like
PfamiView protein in Pfam
PF06761, IcmF-related, 1 hit
PF14331, IcmF-related_N, 1 hit
PF06744, IcmF_C, 1 hit
SUPFAMiSSF52540, SSF52540, 1 hit
TIGRFAMsiTIGR03348, VI_IcmF, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ4K3P4_PSEF5
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q4K3P4
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: August 2, 2005
Last sequence update: August 2, 2005
Last modified: January 19, 2022
This is version 73 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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