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Protein

Myb-related protein MYBAS2

Gene

MYBAS2

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Transcription factor.Curated

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi33 – 57H-T-H motifPROSITE-ProRule annotationAdd BLAST25
DNA bindingi85 – 108H-T-H motifPROSITE-ProRule annotationAdd BLAST24

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding
Biological processTranscription, Transcription regulation

Names & Taxonomyi

Protein namesi
Recommended name:
Myb-related protein MYBAS2
Gene namesi
Name:MYBAS2
Synonyms:MYB17
Ordered Locus Names:Os12g0567300, LOC_Os12g37970
OrganismiOryza sativa subsp. japonica (Rice)
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 12

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002343641 – 242Myb-related protein MYBAS2Add BLAST242

Proteomic databases

PaxDbiQ4JL76

Expressioni

Gene expression databases

ExpressionAtlasiQ4JL76 differential
GenevisibleiQ4JL76 OS

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi39947.LOC_Os12g37970.1

Structurei

3D structure databases

ProteinModelPortaliQ4JL76
SMRiQ4JL76
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini5 – 61HTH myb-type 1PROSITE-ProRule annotationAdd BLAST57
Domaini62 – 112HTH myb-type 2PROSITE-ProRule annotationAdd BLAST51

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi62 – 65Bipartite nuclear localization signal 1Sequence analysis4
Motifi109 – 117Bipartite nuclear localization signal 2Sequence analysis9

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
InParanoidiQ4JL76
KOiK09422
OMAiDEIKMAP
OrthoDBiEOG09360PCP

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket
Isoform MYBAS2-3 (identifier: Q4JL76-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MVTVREEIRK GPWTEQEDLQ LVCTVRLFGE RRWDFIAKVS GLNRTGKSCR
60 70 80 90 100
LRWVNYLHPG LKRGRMSPHE ERLILELHAR WGNRWSRIAR RLPGRTDNEI
110 120 130 140 150
KNYWRTHMRK KAQERKSNMS PSSSSSSLTY QSCHPETPSM IIGIEEQELH
160 170 180 190 200
GGSGCITSIM KSTPVDMDGY PMDQIWMEIE APNVLPGPCF DEAKDSASNS
210 220 230 240
LSGPLLPYPM WDYYCPETCL RMDDEIKVAP QFGYGKGVGP CY
Length:242
Mass (Da):27,844
Last modified:August 2, 2005 - v1
Checksum:iD79481A43C7A6818
GO
Isoform MYBAS2-1 (identifier: Q4JL76-2) [UniParc]FASTAAdd to basket
Also known as: MYBAS2-2

The sequence of this isoform differs from the canonical sequence as follows:
     1-65: Missing.

Show »
Length:177
Mass (Da):20,119
Checksum:iC9AD95946C07DEC3
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti8I → M in CAD44611 (Ref. 2) Curated1
Sequence conflicti194K → E in AK107214 (PubMed:12869764).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0182951 – 65Missing in isoform MYBAS2-1. 1 PublicationAdd BLAST65

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ075261 mRNA Translation: AAY97902.1
DQ075262 mRNA Translation: AAY97903.1
DQ075263 mRNA Translation: AAY97904.2
AJ495785 mRNA Translation: CAD44611.1
DP000011 Genomic DNA Translation: ABA99595.2
AP008218 Genomic DNA Translation: BAF30080.2
AP014968 Genomic DNA Translation: BAT17706.1
AK107214 mRNA No translation available.
RefSeqiXP_015620226.1, XM_015764740.1 [Q4JL76-2]
XP_015620227.1, XM_015764741.1 [Q4JL76-1]
XP_015620229.1, XM_015764743.1 [Q4JL76-2]
UniGeneiOs.11638

Genome annotation databases

EnsemblPlantsiOs12t0567300-00; Os12t0567300-00; Os12g0567300 [Q4JL76-1]
GeneIDi4352559
GrameneiOs12t0567300-00; Os12t0567300-00; Os12g0567300 [Q4JL76-1]
KEGGiosa:4352559

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ075261 mRNA Translation: AAY97902.1
DQ075262 mRNA Translation: AAY97903.1
DQ075263 mRNA Translation: AAY97904.2
AJ495785 mRNA Translation: CAD44611.1
DP000011 Genomic DNA Translation: ABA99595.2
AP008218 Genomic DNA Translation: BAF30080.2
AP014968 Genomic DNA Translation: BAT17706.1
AK107214 mRNA No translation available.
RefSeqiXP_015620226.1, XM_015764740.1 [Q4JL76-2]
XP_015620227.1, XM_015764741.1 [Q4JL76-1]
XP_015620229.1, XM_015764743.1 [Q4JL76-2]
UniGeneiOs.11638

3D structure databases

ProteinModelPortaliQ4JL76
SMRiQ4JL76
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os12g37970.1

Proteomic databases

PaxDbiQ4JL76

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOs12t0567300-00; Os12t0567300-00; Os12g0567300 [Q4JL76-1]
GeneIDi4352559
GrameneiOs12t0567300-00; Os12t0567300-00; Os12g0567300 [Q4JL76-1]
KEGGiosa:4352559

Phylogenomic databases

eggNOGiKOG0048 Eukaryota
COG5147 LUCA
InParanoidiQ4JL76
KOiK09422
OMAiDEIKMAP
OrthoDBiEOG09360PCP

Gene expression databases

ExpressionAtlasiQ4JL76 differential
GenevisibleiQ4JL76 OS

Family and domain databases

CDDicd00167 SANT, 2 hits
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR017930 Myb_dom
IPR001005 SANT/Myb
PfamiView protein in Pfam
PF00249 Myb_DNA-binding, 2 hits
SMARTiView protein in SMART
SM00717 SANT, 2 hits
SUPFAMiSSF46689 SSF46689, 1 hit
PROSITEiView protein in PROSITE
PS51294 HTH_MYB, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiMYBA2_ORYSJ
AccessioniPrimary (citable) accession number: Q4JL76
Secondary accession number(s): Q0IMI5
, Q2QNF6, Q4JL77, Q5NKI2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 16, 2006
Last sequence update: August 2, 2005
Last modified: October 10, 2018
This is version 92 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
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