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Protein

YrdC domain-containing protein, mitochondrial

Gene

Yrdc

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

May regulate the activity of some transporters.By similarity

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
YrdC domain-containing protein, mitochondrial
Alternative name(s):
Ischemia/reperfusion-inducible protein homolog
Gene namesi
Name:Yrdc
Synonyms:Isrip
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 5

Organism-specific databases

RGDi708492 Yrdc

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Membrane, Mitochondrion

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 56MitochondrionSequence analysisAdd BLAST56
ChainiPRO_000034140457 – 280YrdC domain-containing protein, mitochondrialAdd BLAST224

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei61PhosphoserineBy similarity1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ499R4

PTM databases

iPTMnetiQ499R4
PhosphoSitePlusiQ499R4

Expressioni

Gene expression databases

BgeeiENSRNOG00000025424
GenevisibleiQ499R4 RN

Interactioni

Subunit structurei

Interacts with RSC1A1.By similarity

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000037600

Structurei

3D structure databases

ProteinModelPortaliQ499R4
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini68 – 258YrdC-likePROSITE-ProRule annotationAdd BLAST191

Sequence similaritiesi

Belongs to the SUA5 family.Curated

Keywords - Domaini

Transit peptide

Phylogenomic databases

eggNOGiKOG3051 Eukaryota
COG0009 LUCA
GeneTreeiENSGT00390000015364
HOGENOMiHOG000239829
HOVERGENiHBG055700
InParanoidiQ499R4
OMAiWHEQPLA
OrthoDBiEOG091G0KNT
PhylomeDBiQ499R4
TreeFamiTF314358

Family and domain databases

InterProiView protein in InterPro
IPR017945 DHBP_synth_RibB-like_a/b_dom
IPR006070 YrdC-like_dom
PfamiView protein in Pfam
PF01300 Sua5_yciO_yrdC, 1 hit
SUPFAMiSSF55821 SSF55821, 1 hit
TIGRFAMsiTIGR00057 TIGR00057, 1 hit
PROSITEiView protein in PROSITE
PS51163 YRDC, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q499R4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTARPCAGL RAAVAAGMGL SDGPAGSSRG CRLLRPPAPA PALPGARLLR
60 70 80 90 100
LPESEAVEAA SPERSGWTEA LRAAVAELRA GAVVAVPTDT LYGLACSASC
110 120 130 140 150
SAALSCVYRL KGRSEAKPLA VCLGRVADVY RYCQVRVPRE LLEDLFPGPV
160 170 180 190 200
TLVMERSEEL NKDLNPFTPL VGIRIPDHAF MLDLAQMFGG PLALTSANLS
210 220 230 240 250
SQASSLSVEE FQDLWPHLSL VIDGGPIGDS ESPECRLGST VVDLSVPGKF
260 270 280
GIIRSGCALE NTTAILQGKY GLLPSQGSCS
Length:280
Mass (Da):29,231
Last modified:September 13, 2005 - v1
Checksum:i7F3CA66A913C47DE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC088428 mRNA Translation: AAH88428.1
BC099797 mRNA Translation: AAH99797.1
RefSeqiNP_783194.2, NM_175604.2
UniGeneiRn.9475

Genome annotation databases

EnsembliENSRNOT00000039870; ENSRNOP00000037600; ENSRNOG00000025424
GeneIDi319113
KEGGirno:319113
UCSCiRGD:708492 rat

Similar proteinsi

Entry informationi

Entry nameiYRDC_RAT
AccessioniPrimary (citable) accession number: Q499R4
Secondary accession number(s): Q5I0E4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 10, 2008
Last sequence update: September 13, 2005
Last modified: May 23, 2018
This is version 83 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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