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Protein

Protein YkfC

Gene

ykfC

Organism
Escherichia coli (strain K12)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Miscellaneous

Encoded by the CP4-6 prophage.Curated
Missing about 140 C-terminal residues compared to orthologs.Curated

Enzyme and pathway databases

BioCyciEcoCyc:G6133-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YkfC
Gene namesi
Name:ykfC
Ordered Locus Names:b0258, JW5813
OrganismiEscherichia coli (strain K12)
Taxonomic identifieri83333 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacteralesEnterobacteriaceaeEscherichia
Proteomesi
  • UP000000318 Componenti: Chromosome
  • UP000000625 Componenti: Chromosome

Organism-specific databases

EcoGeneiEG13341 ykfC

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001685481 – 381Protein YkfCAdd BLAST381

Proteomic databases

PRIDEiQ47688

Interactioni

Protein-protein interaction databases

BioGridi4262795, 116 interactors
STRINGi316407.85674402

Structurei

3D structure databases

ProteinModelPortaliQ47688
SMRiQ47688
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini72 – 337Reverse transcriptasePROSITE-ProRule annotationAdd BLAST266

Phylogenomic databases

eggNOGiENOG4105EKQ Bacteria
COG3344 LUCA
HOGENOMiHOG000000651
InParanoidiQ47688
PhylomeDBiQ47688

Family and domain databases

InterProiView protein in InterPro
IPR000477 RT_dom
PfamiView protein in Pfam
PF00078 RVT_1, 1 hit
PROSITEiView protein in PROSITE
PS50878 RT_POL, 1 hit

Sequencei

Sequence statusi: Complete.

Q47688-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MIISEMQRKL ATWAATDPSL RIQRLLRLIT QPEWLAEAAR ITLSSKGAHT
60 70 80 90 100
PGVDGVNKTM LQARLAVELQ ILRDELLSGH YQPLPARRVY IPKSNGKLRP
110 120 130 140 150
LGIPALRDRI VQRAMLMAME PIWESDFHTL SYGFRPERSV HHAIRTVKLQ
160 170 180 190 200
LTDCGETRGR WVIEGDLSSY FDTVHHRLLM KAVRRRISDA RFMTLLWKTI
210 220 230 240 250
KAGHIDVGLF RAASEGVPQG GVISPLLSNI MLNEFDQYLH ERYLSGKARK
260 270 280 290 300
DRWYWNNSIQ RGRSTAVREN WQWKPAVAYC RYADDFVLIV KGTKAQVEAI
310 320 330 340 350
REECRGVLEG SLKLRLNMDK TKIPHVNDGF IFLGHRLIRK RSRYGEMRVV
360 370 380
STIPQEKARN FAASLTALLW KVRISGEILL G
Length:381
Mass (Da):43,739
Last modified:November 7, 2018 - v3
Checksum:i1AE71F6B242CC91F
GO

Sequence cautioni

The sequence AAB08678 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70214 Genomic DNA Translation: AAB08678.1 Different initiation.
U00096 Genomic DNA No translation available.
AP009048 Genomic DNA Translation: BAA77927.2
PIRiB64751

Genome annotation databases

EnsemblBacteriaiBAA77927; BAA77927; BAA77927
KEGGiecj:JW5813

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U70214 Genomic DNA Translation: AAB08678.1 Different initiation.
U00096 Genomic DNA No translation available.
AP009048 Genomic DNA Translation: BAA77927.2
PIRiB64751

3D structure databases

ProteinModelPortaliQ47688
SMRiQ47688
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi4262795, 116 interactors
STRINGi316407.85674402

Proteomic databases

PRIDEiQ47688

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAA77927; BAA77927; BAA77927
KEGGiecj:JW5813

Organism-specific databases

EchoBASEiEB3125
EcoGeneiEG13341 ykfC

Phylogenomic databases

eggNOGiENOG4105EKQ Bacteria
COG3344 LUCA
HOGENOMiHOG000000651
InParanoidiQ47688
PhylomeDBiQ47688

Enzyme and pathway databases

BioCyciEcoCyc:G6133-MONOMER

Family and domain databases

InterProiView protein in InterPro
IPR000477 RT_dom
PfamiView protein in Pfam
PF00078 RVT_1, 1 hit
PROSITEiView protein in PROSITE
PS50878 RT_POL, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiYKFC_ECOLI
AccessioniPrimary (citable) accession number: Q47688
Secondary accession number(s): P77710
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 7, 2018
Last modified: November 7, 2018
This is version 112 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Escherichia coli
    Escherichia coli (strain K12): entries and cross-references to EcoGene
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Main funding by: National Institutes of Health

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