UniProtKB - Q46855 (YQHC_ECOLI)
Protein
Uncharacterized HTH-type transcriptional regulator YqhC
Gene
yqhC
Organism
Escherichia coli (strain K12)
Status
Functioni
Regions
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
DNA bindingi | 230 – 251 | H-T-H motifPROSITE-ProRule annotationAdd BLAST | 22 | |
DNA bindingi | 278 – 301 | H-T-H motifPROSITE-ProRule annotationAdd BLAST | 24 |
GO - Molecular functioni
- bacterial-type cis-regulatory region sequence-specific DNA binding Source: EcoCyc
- DNA-binding transcription activator activity Source: EcoCyc
GO - Biological processi
- positive regulation of transcription, DNA-templated Source: EcoCyc
- regulation of transcription, DNA-templated Source: GO_Central
- transcription, DNA-templated Source: EcoCyc
Keywordsi
Molecular function | DNA-binding |
Biological process | Transcription, Transcription regulation |
Enzyme and pathway databases
BioCyci | EcoCyc:G7563-MONOMER |
Names & Taxonomyi
Protein namesi | Recommended name: Uncharacterized HTH-type transcriptional regulator YqhC |
Gene namesi | Name:yqhC Ordered Locus Names:b3010, JW5849 |
Organismi | Escherichia coli (strain K12) |
Taxonomic identifieri | 83333 [NCBI] |
Taxonomic lineagei | Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia › |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000194618 | 1 – 318 | Uncharacterized HTH-type transcriptional regulator YqhCAdd BLAST | 318 |
Proteomic databases
jPOSTi | Q46855 |
PaxDbi | Q46855 |
PRIDEi | Q46855 |
Interactioni
Protein-protein interaction databases
BioGRIDi | 4262379, 29 interactors 851808, 3 interactors |
IntActi | Q46855, 6 interactors |
STRINGi | 511145.b3010 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 213 – 311 | HTH araC/xylS-typePROSITE-ProRule annotationAdd BLAST | 99 |
Phylogenomic databases
eggNOGi | COG2207, Bacteria |
HOGENOMi | CLU_000445_100_2_6 |
InParanoidi | Q46855 |
PhylomeDBi | Q46855 |
Family and domain databases
InterProi | View protein in InterPro IPR009057, Homeobox-like_sf IPR018060, HTH_AraC IPR009594, Tscrpt_reg_HTH_AraC_N |
Pfami | View protein in Pfam PF06719, AraC_N, 1 hit PF12833, HTH_18, 1 hit |
SMARTi | View protein in SMART SM00342, HTH_ARAC, 1 hit |
SUPFAMi | SSF46689, SSF46689, 2 hits |
PROSITEi | View protein in PROSITE PS01124, HTH_ARAC_FAMILY_2, 1 hit |
i Sequence
Sequence statusi: Complete.
Q46855-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MLQNCAQSNC RIIPKKLRDM KREEICRLLA DKVNKLKNKE NSLSGLLPDV
60 70 80 90 100
RLLYGETPFA RTPVMYEPGI IILFSGHKIG YINERVFRYD ANEYLLLTVP
110 120 130 140 150
LPFECETYAT SEVPLAGLRL NVDILQLQEL LMDIGEDEHF QPSMAASGIN
160 170 180 190 200
SATLSEEILC AAERLLDVME RPLDARILGK QIIREILYYV LTGPCGGALL
210 220 230 240 250
ALVSRQTHFS LISRVLKRIE NKYTENLSVE QLAAEANMSV SAFHHNFKSV
260 270 280 290 300
TSTSPLQYLK NYRLHKARMM IIHDGMKASA AAMRVGYESA SQFSREFKRY
310
FGVTPGEDAA RMRAMQGN
Sequence cautioni
The sequence AAA69177 differs from that shown. Reason: Erroneous initiation. Extended N-terminus.Curated
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U28377 Genomic DNA Translation: AAA69177.1 Different initiation. U00096 Genomic DNA Translation: AAC76046.2 AP009048 Genomic DNA Translation: BAE77067.1 |
PIRi | H65087 |
RefSeqi | NP_417483.2, NC_000913.3 WP_001350547.1, NZ_LN832404.1 |
Genome annotation databases
EnsemblBacteriai | AAC76046; AAC76046; b3010 BAE77067; BAE77067; BAE77067 |
GeneIDi | 947491 |
KEGGi | ecj:JW5849 eco:b3010 |
PATRICi | fig|1411691.4.peg.3720 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U28377 Genomic DNA Translation: AAA69177.1 Different initiation. U00096 Genomic DNA Translation: AAC76046.2 AP009048 Genomic DNA Translation: BAE77067.1 |
PIRi | H65087 |
RefSeqi | NP_417483.2, NC_000913.3 WP_001350547.1, NZ_LN832404.1 |
3D structure databases
SMRi | Q46855 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 4262379, 29 interactors 851808, 3 interactors |
IntActi | Q46855, 6 interactors |
STRINGi | 511145.b3010 |
Proteomic databases
jPOSTi | Q46855 |
PaxDbi | Q46855 |
PRIDEi | Q46855 |
Genome annotation databases
EnsemblBacteriai | AAC76046; AAC76046; b3010 BAE77067; BAE77067; BAE77067 |
GeneIDi | 947491 |
KEGGi | ecj:JW5849 eco:b3010 |
PATRICi | fig|1411691.4.peg.3720 |
Organism-specific databases
EchoBASEi | EB2833 |
Phylogenomic databases
eggNOGi | COG2207, Bacteria |
HOGENOMi | CLU_000445_100_2_6 |
InParanoidi | Q46855 |
PhylomeDBi | Q46855 |
Enzyme and pathway databases
BioCyci | EcoCyc:G7563-MONOMER |
Miscellaneous databases
PROi | PR:Q46855 |
Family and domain databases
InterProi | View protein in InterPro IPR009057, Homeobox-like_sf IPR018060, HTH_AraC IPR009594, Tscrpt_reg_HTH_AraC_N |
Pfami | View protein in Pfam PF06719, AraC_N, 1 hit PF12833, HTH_18, 1 hit |
SMARTi | View protein in SMART SM00342, HTH_ARAC, 1 hit |
SUPFAMi | SSF46689, SSF46689, 2 hits |
PROSITEi | View protein in PROSITE PS01124, HTH_ARAC_FAMILY_2, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | YQHC_ECOLI | |
Accessioni | Q46855Primary (citable) accession number: Q46855 Secondary accession number(s): Q2M9I9 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | July 15, 1998 |
Last sequence update: | May 30, 2000 | |
Last modified: | December 2, 2020 | |
This is version 134 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Prokaryotic Protein Annotation Program |