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Protein

Probable peptide export ATP-binding protein YydI

Gene

yydI

Organism
Bacillus subtilis (strain 168)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Suggested to be part of an ABC transporter complex YydIJ involved in export of the modified peptide YydF (Probable). Responsible for energy coupling to the transport system (By similarity).By similarityCurated

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi33 – 40ATPPROSITE-ProRule annotation8

GO - Molecular functioni

Keywordsi

Biological processTransport
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyciBSUB:BSU40150-MONOMER

Protein family/group databases

TCDBi3.A.1.133.1 the atp-binding cassette (abc) superfamily

Names & Taxonomyi

Protein namesi
Recommended name:
Probable peptide export ATP-binding protein YydI
Gene namesi
Name:yydI
Ordered Locus Names:BSU40150
OrganismiBacillus subtilis (strain 168)
Taxonomic identifieri224308 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001570 Componenti: Chromosome

Pathology & Biotechi

Disruption phenotypei

Upregulates expression of the LiaRS two-component regulatory system; this effect is more pronounced on modified competence medium than on rich or sporulation medium.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003701961 – 209Probable peptide export ATP-binding protein YydIAdd BLAST209

Proteomic databases

PaxDbiQ45593
PRIDEiQ45593

Expressioni

Inductioni

Transcriptionally repressed by rok (PubMed:15743949), this was not found to be the case in another study (PubMed:17921301).2 Publications

Interactioni

Subunit structurei

The complex is composed of two ATP-binding proteins (YydI), two transmembrane proteins (YydJ).Curated

Protein-protein interaction databases

STRINGi224308.Bsubs1_010100021656

Structurei

3D structure databases

ProteinModelPortaliQ45593
SMRiQ45593
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini1 – 207ABC transporterPROSITE-ProRule annotationAdd BLAST207

Sequence similaritiesi

Belongs to the ABC transporter superfamily.Curated

Phylogenomic databases

eggNOGiENOG4108Z15 Bacteria
ENOG4111N6V LUCA
HOGENOMiHOG000280277
KOiK16917
OMAiMNIANYT
PhylomeDBiQ45593

Family and domain databases

InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR003439 ABC_transporter-like
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF00005 ABC_tran, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS50893 ABC_TRANSPORTER_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q45593-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNIANYTLKV KGKTLLQDTD LHFSSGKINH VVGKNGVGKS QLAKDFLLNN
60 70 80 90 100
SKRIGRDIRQ NVSLISSSSN IPNDVSKDFL LHFLSKKFDA KMIDKIAYLL
110 120 130 140 150
NLDNIDGKVL IKNLSDGQKQ KLKLLSFLLE DKNIIVLDEI TNSLDKKTVI
160 170 180 190 200
EIHGFLNKYI QENPEKIIIN ITHDLSDLKA IEGDYYIFNH QEIQQYHSVD

KLIEVYINE
Length:209
Mass (Da):23,883
Last modified:November 1, 1996 - v1
Checksum:i07BC160B3B3BE3A3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D78193 Genomic DNA Translation: BAA11273.1
AL009126 Genomic DNA Translation: CAB16052.1
PIRiG70091
RefSeqiNP_391895.1, NC_000964.3
WP_003242913.1, NZ_JNCM01000034.1

Genome annotation databases

EnsemblBacteriaiCAB16052; CAB16052; BSU40150
GeneIDi937743
KEGGibsu:BSU40150
PATRICifig|224308.179.peg.4343

Similar proteinsi

Entry informationi

Entry nameiYYDI_BACSU
AccessioniPrimary (citable) accession number: Q45593
Secondary accession number(s): Q794X2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 14, 2009
Last sequence update: November 1, 1996
Last modified: May 23, 2018
This is version 108 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Bacillus subtilis
    Bacillus subtilis (strain 168): entries, gene names and cross-references to SubtiList
  2. SIMILARITY comments
    Index of protein domains and families

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