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Entry version 143 (12 Aug 2020)
Sequence version 2 (01 May 1999)
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Protein

60S ribosomal protein L8-3

Gene

RPL8C

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
60S ribosomal protein L8-3
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:RPL8C
Ordered Locus Names:At4g36130
ORF Names:F23E13.20, T19K4.260
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT4G36130

The Arabidopsis Information Resource

More...
TAIRi
locus:2122189, AT4G36130

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002399281 – 25860S ribosomal protein L8-3Add BLAST258

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q42064

PRoteomics IDEntifications database

More...
PRIDEi
Q42064

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
228125

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q42064

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q42064, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q42064, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
15052, 2 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT4G36130.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2309, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_036235_0_3_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q42064

KEGG Orthology (KO)

More...
KOi
K02938

Identification of Orthologs from Complete Genome Data

More...
OMAi
SCIELRP

Database of Orthologous Groups

More...
OrthoDBi
1156335at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q42064

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.30.30.30, 1 hit
4.10.950.10, 1 hit

HAMAP database of protein families

More...
HAMAPi
MF_01320_A, Ribosomal_L2_A, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012340, NA-bd_OB-fold
IPR022666, Rbsml_prot_L2_RNA-bd_dom
IPR014722, Rib_L2_dom2
IPR002171, Ribosomal_L2
IPR023672, Ribosomal_L2_arc
IPR022669, Ribosomal_L2_C
IPR022671, Ribosomal_L2_CS
IPR014726, Ribosomal_L2_dom3
IPR008991, Translation_prot_SH3-like_sf

The PANTHER Classification System

More...
PANTHERi
PTHR13691, PTHR13691, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00181, Ribosomal_L2, 1 hit
PF03947, Ribosomal_L2_C, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF002158, Ribosomal_L2, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM01383, Ribosomal_L2, 1 hit
SM01382, Ribosomal_L2_C, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF50104, SSF50104, 1 hit
SSF50249, SSF50249, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS00467, RIBOSOMAL_L2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q42064-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGRVIRAQRK GAGSVFKSHT HHRKGPAKFR SLDFGERNGY LKGVVTEIIH
60 70 80 90 100
DPGRGAPLAR VAFRHPFRFK KQKELFVAAE GMYTGQFLYC GKKATLVVGN
110 120 130 140 150
VLPLRSIPEG AVICNVEHHV GDRGVFARAS GDYAIVIAHN PDNDTSRIKL
160 170 180 190 200
PSGSKKIVPS GCRAMIGQVA GGGRTEKPML KAGNAYHKYR VKRNCWPKVR
210 220 230 240 250
GVAMNPVEHP HGGGNHQHIG HASTVRRDAP PGKKVGLIAA RRTGRLRGQA

AALASKAD
Length:258
Mass (Da):27,948
Last modified:May 1, 1999 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iAA9897694A2A95BB
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AL022141 Genomic DNA Translation: CAA18119.1
AL022373 Genomic DNA Translation: CAA18507.1
AL161588 Genomic DNA Translation: CAB81522.1
CP002687 Genomic DNA Translation: AEE86623.1
AF361610 mRNA Translation: AAK32778.1
AF367335 mRNA Translation: AAK32922.1
AY058221 mRNA Translation: AAL15395.1
Z25971 mRNA Translation: CAA81122.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T04582

NCBI Reference Sequences

More...
RefSeqi
NP_195336.1, NM_119780.3

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT4G36130.1; AT4G36130.1; AT4G36130

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
829770

Gramene; a comparative resource for plants

More...
Gramenei
AT4G36130.1; AT4G36130.1; AT4G36130

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT4G36130

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL022141 Genomic DNA Translation: CAA18119.1
AL022373 Genomic DNA Translation: CAA18507.1
AL161588 Genomic DNA Translation: CAB81522.1
CP002687 Genomic DNA Translation: AEE86623.1
AF361610 mRNA Translation: AAK32778.1
AF367335 mRNA Translation: AAK32922.1
AY058221 mRNA Translation: AAL15395.1
Z25971 mRNA Translation: CAA81122.1
PIRiT04582
RefSeqiNP_195336.1, NM_119780.3

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi15052, 2 interactors
STRINGi3702.AT4G36130.1

PTM databases

iPTMnetiQ42064

Proteomic databases

PaxDbiQ42064
PRIDEiQ42064
ProteomicsDBi228125

Genome annotation databases

EnsemblPlantsiAT4G36130.1; AT4G36130.1; AT4G36130
GeneIDi829770
GrameneiAT4G36130.1; AT4G36130.1; AT4G36130
KEGGiath:AT4G36130

Organism-specific databases

AraportiAT4G36130
TAIRilocus:2122189, AT4G36130

Phylogenomic databases

eggNOGiKOG2309, Eukaryota
HOGENOMiCLU_036235_0_3_1
InParanoidiQ42064
KOiK02938
OMAiSCIELRP
OrthoDBi1156335at2759
PhylomeDBiQ42064

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q42064

Gene expression databases

ExpressionAtlasiQ42064, baseline and differential
GenevisibleiQ42064, AT

Family and domain databases

Gene3Di2.30.30.30, 1 hit
4.10.950.10, 1 hit
HAMAPiMF_01320_A, Ribosomal_L2_A, 1 hit
InterProiView protein in InterPro
IPR012340, NA-bd_OB-fold
IPR022666, Rbsml_prot_L2_RNA-bd_dom
IPR014722, Rib_L2_dom2
IPR002171, Ribosomal_L2
IPR023672, Ribosomal_L2_arc
IPR022669, Ribosomal_L2_C
IPR022671, Ribosomal_L2_CS
IPR014726, Ribosomal_L2_dom3
IPR008991, Translation_prot_SH3-like_sf
PANTHERiPTHR13691, PTHR13691, 1 hit
PfamiView protein in Pfam
PF00181, Ribosomal_L2, 1 hit
PF03947, Ribosomal_L2_C, 1 hit
PIRSFiPIRSF002158, Ribosomal_L2, 1 hit
SMARTiView protein in SMART
SM01383, Ribosomal_L2, 1 hit
SM01382, Ribosomal_L2_C, 1 hit
SUPFAMiSSF50104, SSF50104, 1 hit
SSF50249, SSF50249, 1 hit
PROSITEiView protein in PROSITE
PS00467, RIBOSOMAL_L2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRL83_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q42064
Secondary accession number(s): Q7DLL7
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 13, 2006
Last sequence update: May 1, 1999
Last modified: August 12, 2020
This is version 143 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
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