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UniProtKB - Q40638 (EXPB1_ORYSJ)

Entry version 139 (23 Feb 2022)
Sequence version 2 (30 May 2006)
Previous versions | rss
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Protein

Expansin-B1

Gene

EXPB1a

more
Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence (By similarity).

By similarity

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processCell wall biogenesis/degradation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Expansin-B1
Alternative name(s):
Beta-expansin-1
Major pollen allergen Ory s 1
Ory s I
OsEXPB1
OsaEXPb1.2
OsaEXPb1.3
Allergen: Ory s 1
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:EXPB1a
Ordered Locus Names:Os03g0106500, LOC_Os03g01610
ORF Names:OSJNBa0009C08.15
AND
Name:EXPB1b
Ordered Locus Names:Os03g0106900, LOC_Os03g01650
ORF Names:OSJNBa0009C08.19
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Oryza › Oryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007752 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 3
  • UP000059680 Componenti: Chromosome 3
  • UP000000763 Componenti: Chromosome 3

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Cell wall, Membrane, Secreted

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology%5Fand%5Fbiotech%5Fsection">'Pathology and Biotech'</a> section is used for proteins that cause an allergic reaction in mammals. We usually specify in which species the protein is allergenic.<p><a href='/help/allergenic_properties' target='_top'>More...</a></p>Allergenic propertiesi

Causes an allergic reaction in human. Causes grass pollen allergy. Binds to IgE.1 Publication

Keywords - Diseasei

Allergen

Protein family/group databases

Allergome; a platform for allergen knowledge

More...Allergomei		3394, Ory s 1.0101
499, Ory s 1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 22Sequence analysisAdd BLAST22
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000000872123 – 267Expansin-B1Add BLAST245

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi32N-linked (GlcNAc...) asparagineSequence analysis1
<p>This subsection of the PTM / Processing":/help/ptm_processing_section section describes the positions of cysteine residues participating in disulfide bonds.<p><a href='/help/disulfid' target='_top'>More...</a></p>Disulfide bondi64 ↔ 92PROSITE-ProRule annotation
Disulfide bondi95 ↔ 162PROSITE-ProRule annotation
Disulfide bondi100 ↔ 106PROSITE-ProRule annotation

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q40638

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in mature anthers but not in vegetative or other floral tissues.

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...ExpressionAtlasi		Q40638, baseline

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q40638, OS

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		4530.OS03T0106500-01

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q40638

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini61 – 167Expansin-like EG45PROSITE-ProRule annotationAdd BLAST107
Domaini181 – 262Expansin-like CBDPROSITE-ProRule annotationAdd BLAST82

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the expansin family. Expansin B subfamily.Curated

Keywords - Domaini

Signal

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG502QRTE, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_027462_1_1_1

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q40638

Identification of Orthologs from Complete Genome Data

More...OMAi		TQFRRVK

Database of Orthologous Groups

More...OrthoDBi		754048at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.40.40.10, 1 hit
2.60.40.760, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR007118, Expan_Lol_pI
IPR007112, Expansin/allergen_DPBB_dom
IPR007117, Expansin_CBD
IPR036749, Expansin_CBD_sf
IPR005795, LolPI
IPR009009, RlpA-like_DPBB
IPR036908, RlpA-like_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF03330, DPBB_1, 1 hit
PF01357, Expansin_C, 1 hit

Protein Motif fingerprint database; a protein domain database

More...PRINTSi		PR01225, EXPANSNFAMLY
PR00829, LOLP1ALLERGN

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00837, DPBB_1, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF49590, SSF49590, 1 hit
SSF50685, SSF50685, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS50843, EXPANSIN_CBD, 1 hit
PS50842, EXPANSIN_EG45, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q40638-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASSSLLLAC VVVAAMVSAV SCGPPKVPPG PNITTSYGDK WLEAKATWYG 
        60         70         80         90        100
APKGAGPKDN GGACGYKDVD KAPFLGMNSC GNDPIFKDGK GCGSCFEIKC 
       110        120        130        140        150
SKPEACSDKP ALIHVTDMND EPIAAYHFDL SGLAFGAMAK DGKDEELRKA 
       160        170        180        190        200
GIIDTQFRRV KCKYPADTKI TFHIEKASNP NYLALLVKYV AGDGDVVEVE 
       210        220        230        240        250
IKEKGSEEWK ALKESWGAIW RIDTPKPLKG PFSVRVTTEG GEKIIAEDAI 
       260 
PDGWKADSVY KSNVQAK
Length:267
Mass (Da):28,627
Last modified:May 30, 2006 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i3B89E1FE02D5A5DC
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAA86533 differs from that shown. Sequencing errors.Curated
The sequence AAA86533 differs from that shown. Reason: Frameshift.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
U31771 mRNA Translation: AAA86533.1 Sequence problems.
AF261270 mRNA Translation: AAF72983.1
AY039023 Genomic DNA Translation: AAK84682.1
AC107224 Genomic DNA Translation: AAN60487.1
AC107224 Genomic DNA Translation: AAN60491.1
DP000009 Genomic DNA Translation: ABF93540.1
DP000009 Genomic DNA Translation: ABF93536.1
AP008209 Genomic DNA Translation: BAF10600.2
AP008209 Genomic DNA Translation: BAF10603.1
AP014959 Genomic DNA Translation: BAS81873.1
AP014959 Genomic DNA Translation: BAS81878.1
CM000140 Genomic DNA Translation: EAZ25286.1
AK072792 mRNA Translation: BAG93147.1

Protein sequence database of the Protein Information Resource

More...PIRi		T03303

NCBI Reference Sequences

More...RefSeqi		XP_015629185.1, XM_015773699.1
XP_015629913.1, XM_015774427.1

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		Os03t0106500-01; Os03t0106500-01; Os03g0106500
Os03t0106900-00; Os03t0106900-00; Os03g0106900

Database of genes from NCBI RefSeq genomes

More...GeneIDi		4331323
4331326

Gramene; a comparative resource for plants

More...Gramenei		Os03t0106500-01; Os03t0106500-01; Os03g0106500
Os03t0106900-00; Os03t0106900-00; Os03g0106900

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		osa:4331323
osa:4331326

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross%5Freferences%5Fsection">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

EXPANSIN homepage

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U31771 mRNA Translation: AAA86533.1 Sequence problems.
AF261270 mRNA Translation: AAF72983.1
AY039023 Genomic DNA Translation: AAK84682.1
AC107224 Genomic DNA Translation: AAN60487.1
AC107224 Genomic DNA Translation: AAN60491.1
DP000009 Genomic DNA Translation: ABF93540.1
DP000009 Genomic DNA Translation: ABF93536.1
AP008209 Genomic DNA Translation: BAF10600.2
AP008209 Genomic DNA Translation: BAF10603.1
AP014959 Genomic DNA Translation: BAS81873.1
AP014959 Genomic DNA Translation: BAS81878.1
CM000140 Genomic DNA Translation: EAZ25286.1
AK072792 mRNA Translation: BAG93147.1
PIRiT03303
RefSeqiXP_015629185.1, XM_015773699.1
XP_015629913.1, XM_015774427.1

3D structure databases

SMRiQ40638
ModBaseiSearch...

Protein-protein interaction databases

STRINGi4530.OS03T0106500-01

Protein family/group databases

Allergomei3394, Ory s 1.0101
499, Ory s 1

Proteomic databases

PaxDbiQ40638

Genome annotation databases

EnsemblPlantsiOs03t0106500-01; Os03t0106500-01; Os03g0106500
Os03t0106900-00; Os03t0106900-00; Os03g0106900
GeneIDi4331323
4331326
GrameneiOs03t0106500-01; Os03t0106500-01; Os03g0106500
Os03t0106900-00; Os03t0106900-00; Os03g0106900
KEGGiosa:4331323
osa:4331326

Phylogenomic databases

eggNOGiENOG502QRTE, Eukaryota
HOGENOMiCLU_027462_1_1_1
InParanoidiQ40638
OMAiTQFRRVK
OrthoDBi754048at2759

Gene expression databases

ExpressionAtlasiQ40638, baseline
GenevisibleiQ40638, OS

Family and domain databases

Gene3Di2.40.40.10, 1 hit
2.60.40.760, 1 hit
InterProiView protein in InterPro
IPR007118, Expan_Lol_pI
IPR007112, Expansin/allergen_DPBB_dom
IPR007117, Expansin_CBD
IPR036749, Expansin_CBD_sf
IPR005795, LolPI
IPR009009, RlpA-like_DPBB
IPR036908, RlpA-like_sf
PfamiView protein in Pfam
PF03330, DPBB_1, 1 hit
PF01357, Expansin_C, 1 hit
PRINTSiPR01225, EXPANSNFAMLY
PR00829, LOLP1ALLERGN
SMARTiView protein in SMART
SM00837, DPBB_1, 1 hit
SUPFAMiSSF49590, SSF49590, 1 hit
SSF50685, SSF50685, 1 hit
PROSITEiView protein in PROSITE
PS50843, EXPANSIN_CBD, 1 hit
PS50842, EXPANSIN_EG45, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiEXPB1_ORYSJ
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q40638
Secondary accession number(s): Q0DVY5
, Q0DVY8, Q10SZ3, Q8GSC5, Q9LD01
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: May 30, 2006
Last modified: February 23, 2022
This is version 139 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Allergens
    Nomenclature of allergens and list of entries
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
  3. SIMILARITY comments
    Index of protein domains and families
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