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Protein

Echinoderm microtubule-associated protein-like 4

Gene

Eml4

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

May modify the assembly dynamics of microtubules, such that microtubules are slightly longer, but more dynamic.By similarity

GO - Molecular functioni

GO - Biological processi

  • negative regulation of microtubule depolymerization Source: MGI

Names & Taxonomyi

Protein namesi
Recommended name:
Echinoderm microtubule-associated protein-like 4
Short name:
EMAP-4
Gene namesi
Name:Eml4
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Unplaced

Organism-specific databases

MGIiMGI:1926048 Eml4

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton, Microtubule

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002843921 – 988Echinoderm microtubule-associated protein-like 4Add BLAST988

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei1N-acetylmethionineBy similarity1
Modified residuei7PhosphoserineBy similarity1
Modified residuei13PhosphoserineBy similarity1
Modified residuei16PhosphoserineBy similarity1
Modified residuei61PhosphoserineBy similarity1
Modified residuei79PhosphoserineCombined sources1
Modified residuei96PhosphothreonineBy similarity1
Modified residuei144PhosphoserineCombined sources1
Modified residuei146PhosphoserineCombined sources1
Modified residuei171PhosphoserineBy similarity1
Modified residuei200PhosphoserineBy similarity1
Modified residuei201PhosphothreonineBy similarity1
Modified residuei237PhosphotyrosineBy similarity1
Modified residuei248PhosphothreonineBy similarity1
Modified residuei906PhosphoserineBy similarity1
Modified residuei908PhosphoserineCombined sources1
Modified residuei914PhosphoserineBy similarity1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

EPDiQ3UMY5
MaxQBiQ3UMY5
PaxDbiQ3UMY5
PeptideAtlasiQ3UMY5
PRIDEiQ3UMY5

PTM databases

iPTMnetiQ3UMY5
PhosphoSitePlusiQ3UMY5

Expressioni

Gene expression databases

CleanExiMM_EML4

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi219641, 1 interactor
STRINGi10090.ENSMUSP00000094528

Structurei

3D structure databases

ProteinModelPortaliQ3UMY5
SMRiQ3UMY5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati270 – 308WD 1Add BLAST39
Repeati312 – 359WD 2Add BLAST48
Repeati367 – 407WD 3Add BLAST41
Repeati414 – 449WD 4Add BLAST36
Repeati456 – 495WD 5Add BLAST40
Repeati511 – 549WD 6Add BLAST39
Repeati554 – 590WD 7Add BLAST37
Repeati593 – 632WD 8Add BLAST40
Repeati636 – 673WD 9Add BLAST38
Repeati679 – 715WD 10Add BLAST37
Repeati722 – 761WD 11Add BLAST40
Repeati771 – 829WD 12Add BLAST59
Repeati836 – 875WD 13Add BLAST40

Sequence similaritiesi

Belongs to the WD repeat EMAP family.Curated

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

eggNOGiENOG410KDGE Eukaryota
COG2319 LUCA
HOGENOMiHOG000294061
HOVERGENiHBG051470
InParanoidiQ3UMY5
KOiK15420
PhylomeDBiQ3UMY5

Family and domain databases

Gene3Di2.130.10.10, 3 hits
InterProiView protein in InterPro
IPR005108 HELP
IPR011047 Quinoprotein_ADH-like_supfam
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF03451 HELP, 1 hit
PF00400 WD40, 5 hits
SMARTiView protein in SMART
SM00320 WD40, 9 hits
SUPFAMiSSF50978 SSF50978, 1 hit
SSF50998 SSF50998, 1 hit
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 1 hit
PS50082 WD_REPEATS_2, 4 hits
PS50294 WD_REPEATS_REGION, 3 hits

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q3UMY5-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MDGFAGSLDD SISAASTSDV QDRLSALESR VQQQEDEITV LKAALADVLR
60 70 80 90 100
RLAISEDHVA SVKKSMPSKG QPSLREAISM SCITNGSGIS RKQNHTSSVS
110 120 130 140 150
IARKETLSSA AKSGTEKKKE KPQGQREKKE DSHSNDQSPQ IRASPSPQPS
160 170 180 190 200
SQPLQINRQT PESKSSAPIK SIKRPPTAEK SHNSWENSDD SRNKLMKTVS
210 220 230 240 250
TSKLISKVIK NADKHKDVIV NQAKMSTREK NSQEGEYIKM FMRGRPITMF
260 270 280 290 300
IPSDVDNYDD IRTELPPEKL KLEWVYGYRG KDCRANVYLL PTGEIVYFIA
310 320 330 340 350
SVVVLFNYEE RTQRHYLGHT DCVRCLAVHP DKIRIATGQI AGVDKDGRPL
360 370 380 390 400
QPHVRVWDSV SLTTLHVIGL GTFERGVGCL DFSKADSGVH LCVIDDSNEH
410 420 430 440 450
MLTVWDWQKK SKIAEIKTTN EVVLAVEFHP TDANTIITCG KSHIFFWTWS
460 470 480 490 500
GNSLTRKQGI FGKYEKPKFV QCLAFLGNGD VLTGDSGGVM LIWSKTMVEP
510 520 530 540 550
PPGKGPKGVY QINRQIKAHD GSVFTLCQMR NGMLLTGGGK DRKIILWDHD
560 570 580 590 600
LNLEREIEVP DQYGTIRAVA EGRAEQFLVG TSRNFILRGT FNDGFQIEVQ
610 620 630 640 650
GHRDELWGLA THPFKDLLLT CAQDRQVCMW NSVEHRLEWT RLVDEPGHCA
660 670 680 690 700
DFHPSGTVVA IGTHSGRWFV LDAETRDLVS IHTDGNEQLS VMRYSVDGTL
710 720 730 740 750
LAVGSHDNFI YLYTVLENGR KYSRYGKCTG HSSYITHLDW SPDNKHIMSN
760 770 780 790 800
SGDYEILYWD IENGCKLIRN RSDCKDIDWT TYTCVLGFQV FGVWPEGSDG
810 820 830 840 850
TDINALVRSH NRRVIAVADD FCKVHLFQYP CSKAKAPSHK YSAHSSHVTN
860 870 880 890 900
VSFTHNDSHL ISTGGKDMSI IQWKLVEKLP VPQNEVITDA SVTKTPASSS
910 920 930 940 950
ETARPSNSPP LPPSLPLTGT AEEESRMGSS PTLVENSLEQ IAEPSEEQSE
960 970 980
WGSEDLGVVI DEEPASELSE TQGATELPEE ERGITPLC
Length:988
Mass (Da):110,027
Last modified:October 11, 2005 - v1
Checksum:i950336CFC1C178D5
GO
Isoform 2 (identifier: Q3UMY5-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     114-171: Missing.
     223-233: Missing.

Note: No experimental confirmation available.
Show »
Length:919
Mass (Da):102,359
Checksum:iE60BB52B9525D4E4
GO
Isoform 3 (identifier: Q3UMY5-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-8: MDGFAGSL → MNRVSSDPVAIP
     114-171: Missing.

Note: No experimental confirmation available.
Show »
Length:934
Mass (Da):104,109
Checksum:i62D2D4042B771FB2
GO
Isoform 4 (identifier: Q3UMY5-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     113-214: SGTEKKKEKP...ISKVIKNADK → R
     223-233: Missing.

Note: No experimental confirmation available.
Show »
Length:876
Mass (Da):97,563
Checksum:i4576D56445E59DAB
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti603R → T in AAH67011 (PubMed:15489334).Curated1
Sequence conflicti603R → T in AAH66099 (PubMed:15489334).Curated1
Sequence conflicti603R → T in AAH79619 (PubMed:15489334).Curated1
Sequence conflicti603R → T in AAH65178 (PubMed:15489334).Curated1
Sequence conflicti603R → T in AAH70427 (PubMed:15489334).Curated1
Sequence conflicti804N → I in AAH67011 (PubMed:15489334).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_0244841 – 8MDGFAGSL → MNRVSSDPVAIP in isoform 3. 1 Publication8
Alternative sequenceiVSP_024485113 – 214SGTEK…KNADK → R in isoform 4. 1 PublicationAdd BLAST102
Alternative sequenceiVSP_024486114 – 171Missing in isoform 2 and isoform 3. 1 PublicationAdd BLAST58
Alternative sequenceiVSP_024487223 – 233Missing in isoform 2 and isoform 4. 1 PublicationAdd BLAST11

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK144604 mRNA Translation: BAE25963.1
BC065178 mRNA Translation: AAH65178.1
BC066099 mRNA Translation: AAH66099.1
BC067011 mRNA Translation: AAH67011.1
BC070427 mRNA Translation: AAH70427.1
BC079619 mRNA Translation: AAH79619.1
CCDSiCCDS37708.1 [Q3UMY5-4]
CCDS50192.1 [Q3UMY5-1]
CCDS50193.1 [Q3UMY5-2]
RefSeqiNP_001107834.1, NM_001114362.1
NP_001273496.1, NM_001286567.1
NP_955760.3, NM_199466.3
UniGeneiMm.295565

Genome annotation databases

GeneIDi78798
KEGGimmu:78798
UCSCiuc008drx.2 mouse [Q3UMY5-4]
uc008dry.2 mouse [Q3UMY5-3]
uc008dsb.2 mouse [Q3UMY5-2]

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiEMAL4_MOUSE
AccessioniPrimary (citable) accession number: Q3UMY5
Secondary accession number(s): Q6NS73
, Q6NXL8, Q6NZJ8, Q6P1A7
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: October 11, 2005
Last modified: March 28, 2018
This is version 102 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

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