UniProtKB - Q3KTM2 (GDPD5_CHICK)
Glycerophosphodiester phosphodiesterase domain-containing protein 5
GDPD5
Functioni
Glycerophosphodiester phosphodiesterase that promotes cell cycle exit and drives spinal motor neuron differentiation (PubMed:16195461, PubMed:19766572, PubMed:23329048).
Mediates the cleavage of glycosylphosphatidylinositol (GPI) anchor of target proteins: removes the GPI-anchor of RECK, leading to release RECK from the plasma membrane (PubMed:23329048).
May contribute to the osmotic regulation of cellular glycerophosphocholine (By similarity).
By similarity3 PublicationsCatalytic activityi
- a 1,2-diacyl-sn-glycero-3-phospho-(1D-myo-inositol-4,5-bisphosphate) + H2O = 1D-myo-inositol 1,4,5-trisphosphate + a 1,2-diacyl-sn-glycerol + H+1 PublicationEC:3.1.4.111 Publication
- EC:3.1.4.2By similarityThis reaction proceeds in the forwardBy similarity direction.
Activity regulationi
GO - Molecular functioni
- glycerophosphocholine phosphodiesterase activity Source: UniProtKB-EC
- glycerophosphodiester phosphodiesterase activity Source: MGI
- phosphatidylinositol phospholipase C activity Source: UniProtKB-EC
GO - Biological processi
- lipid metabolic process Source: UniProtKB-KW
- nervous system development Source: UniProtKB-KW
- positive regulation of neuron differentiation Source: CACAO
Keywordsi
Molecular function | Hydrolase |
Biological process | Lipid metabolism, Neurogenesis |
Names & Taxonomyi
Protein namesi | Recommended name: Glycerophosphodiester phosphodiesterase domain-containing protein 5CuratedAlternative name(s): |
Gene namesi | Name:GDPD5 Synonyms:GDE21 Publication |
Organismi | Gallus gallus (Chicken) |
Taxonomic identifieri | 9031 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Archelosauria › Archosauria › Dinosauria › Saurischia › Theropoda › Coelurosauria › Aves › Neognathae › Galloanserae › Galliformes › Phasianidae › Phasianinae › Gallus |
Proteomesi |
|
Subcellular locationi
Other locations
- Endomembrane system By similarity; Multi-pass membrane protein Sequence analysis
- perinuclear region By similarity
- growth cone By similarity
Other locations
- endomembrane system Source: UniProtKB-SubCell
- growth cone Source: UniProtKB-SubCell
- integral component of membrane Source: UniProtKB-KW
- perinuclear region of cytoplasm Source: UniProtKB-SubCell
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Topological domaini | 1 – 42 | CytoplasmicSequence analysisAdd BLAST | 42 | |
Transmembranei | 43 – 63 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 64 – 87 | ExtracellularSequence analysisAdd BLAST | 24 | |
Transmembranei | 88 – 108 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 109 – 125 | CytoplasmicSequence analysisAdd BLAST | 17 | |
Transmembranei | 126 – 146 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 147 – 160 | ExtracellularSequence analysisAdd BLAST | 14 | |
Transmembranei | 161 – 181 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 182 – 192 | CytoplasmicSequence analysisAdd BLAST | 11 | |
Transmembranei | 193 – 213 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 214 – 497 | ExtracellularSequence analysisAdd BLAST | 284 | |
Transmembranei | 498 – 518 | HelicalSequence analysisAdd BLAST | 21 | |
Topological domaini | 519 – 599 | CytoplasmicSequence analysisAdd BLAST | 81 |
Keywords - Cellular componenti
Cell projection, Cytoplasm, MembranePathology & Biotechi
Mutagenesis
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Mutagenesisi | 15 | C → S: Retains the ability to bind PRDX1; forms a mixed-disulfide with PRDX1; can be reduced by PRDX1; promote motor neuron differentiation as the wild type; when associated with S-18. 1 Publication | 1 | |
Mutagenesisi | 18 | C → S: Retains the ability to bind PRDX1; forms a mixed-disulfide with PRDX1; can be reduced by PRDX1; promote motor neuron differentiation as the wild type; when associated with S-15. 1 Publication | 1 | |
Mutagenesisi | 25 | C → S: Enhances the ability to promote motor neuron differentiation. Retains the ability to bind PRDX1; loss the ability to form a mixed-disulfide with PRDX1; loss the ability to be reduced by PRDX1; when associated with S-576. 1 Publication | 1 | |
Mutagenesisi | 236 – 239 | APML → GAHD: Catalytically inactive mutant. Abolishes ability to remove the GPI-anchor of RECK. 1 Publication | 4 | |
Mutagenesisi | 275 | H → A: Abolishes the ability to promote motor neuron differentiation. 1 Publication | 1 | |
Mutagenesisi | 576 | C → S: Enhances the ability to promote motor neuron differentiation. Retains the ability to bind PRDX1; loss the ability to form a mixed-disulfide with PRDX1; loss the ability to be reduced by PRDX1; when associated with S-25. 1 Publication | 1 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000387960 | 1 – 599 | Glycerophosphodiester phosphodiesterase domain-containing protein 5Add BLAST | 599 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Disulfide bondi | 15 ↔ 18 | 1 Publication | ||
Disulfide bondi | 25 ↔ 576 | 1 Publication | ||
Glycosylationi | 301 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 336 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 352 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 374 | N-linked (GlcNAc...) asparagineSequence analysis | 1 | |
Glycosylationi | 448 | N-linked (GlcNAc...) asparagineSequence analysis | 1 |
Post-translational modificationi
Keywords - PTMi
Disulfide bond, GlycoproteinProteomic databases
PaxDbi | Q3KTM2 |
Expressioni
Tissue specificityi
Developmental stagei
Interactioni
Subunit structurei
Interacts with PRDX1; forms a mixed-disulfide with PRDX1, leading to disrupt intramolecular disulfide bond between Cys-25 and Cys-576.
1 PublicationBinary interactionsi
Q3KTM2
With | #Exp. | IntAct |
---|---|---|
PRDX1 [P0CB50] | 5 | EBI-2464223,EBI-2464239 |
Protein-protein interaction databases
IntActi | Q3KTM2, 3 interactors |
STRINGi | 9031.ENSGALP00000027954 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 228 – 485 | GP-PDEAdd BLAST | 258 |
Sequence similaritiesi
Keywords - Domaini
Transmembrane, Transmembrane helixPhylogenomic databases
eggNOGi | KOG2258, Eukaryota |
InParanoidi | Q3KTM2 |
PhylomeDBi | Q3KTM2 |
Family and domain databases
Gene3Di | 3.20.20.190, 1 hit |
InterProi | View protein in InterPro IPR030395, GP_PDE_dom IPR017946, PLC-like_Pdiesterase_TIM-brl |
Pfami | View protein in Pfam PF03009, GDPD, 1 hit |
SUPFAMi | SSF51695, SSF51695, 1 hit |
PROSITEi | View protein in PROSITE PS51704, GP_PDE, 1 hit |
i Sequence
Sequence statusi: Complete.
10 20 30 40 50
MVKHQPLQYY EPQLCLSCLT GIYGCRWKRY QRSHDDTTKW ERLWFLILTS
60 70 80 90 100
SFFLTLVWFY FWWEVHNDYN EINWFLYNRM GYWSDWSIPI LVTTAAGFTY
110 120 130 140 150
ITVLLILALC HIAVGQQMNL HWLHKIGLMT TLITTVVTMS SIAQLWDDEW
160 170 180 190 200
EMVFISLQAT APFLHIGALA AVTALSWLIA GQFARMEKAT SQMLMVTAYL
210 220 230 240 250
AVVVALYLVP LTISSPCIME KKALGPKPAI IGHRGAPMLA PENTLMSFQK
260 270 280 290 300
AVEQKIYGVQ ADVILSYDGV PFLMHDKTLR RTTNVEEVFP GRAYEHSSMF
310 320 330 340 350
NWTDLEMLNA GEWFLRNDPF WTAGSLSRSD YLEAANQSVC KLADMLEVIK
360 370 380 390 400
DNTSLILNFQ DLPPDHPYYT SYINITLKTI LASGIQQQAV MWLPDTERQL
410 420 430 440 450
VRQIAPAFQQ TSGLKLDAER LREKGIVKLN LRYTKVTNED VRDYMAANLS
460 470 480 490 500
VNLYTVNEPW LYSILWCTGV PSVTSDSSHV LRKVPFPIWL MPPDEYRLIW
510 520 530 540 550
ITSDLISFII IVGVFIFQNY HNDQWRLGSI RTYNPEQIML SAAVRRSSRD
560 570 580 590
VKIMKEKLIF SEINNGVETT DELSLCSENG YANEMVTPTD HRDTRLRMN
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AY910750 mRNA Translation: AAX89036.1 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AY910750 mRNA Translation: AAX89036.1 |
3D structure databases
SMRi | Q3KTM2 |
ModBasei | Search... |
Protein-protein interaction databases
IntActi | Q3KTM2, 3 interactors |
STRINGi | 9031.ENSGALP00000027954 |
Proteomic databases
PaxDbi | Q3KTM2 |
Phylogenomic databases
eggNOGi | KOG2258, Eukaryota |
InParanoidi | Q3KTM2 |
PhylomeDBi | Q3KTM2 |
Family and domain databases
Gene3Di | 3.20.20.190, 1 hit |
InterProi | View protein in InterPro IPR030395, GP_PDE_dom IPR017946, PLC-like_Pdiesterase_TIM-brl |
Pfami | View protein in Pfam PF03009, GDPD, 1 hit |
SUPFAMi | SSF51695, SSF51695, 1 hit |
PROSITEi | View protein in PROSITE PS51704, GP_PDE, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | GDPD5_CHICK | |
Accessioni | Q3KTM2Primary (citable) accession number: Q3KTM2 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | November 3, 2009 |
Last sequence update: | November 8, 2005 | |
Last modified: | February 23, 2022 | |
This is version 89 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Chordata Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- SIMILARITY comments
Index of protein domains and families