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Entry version 91 (02 Dec 2020)
Sequence version 1 (08 Nov 2005)
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Protein
Submitted name:

Putative Rhs element Vgr protein

Gene

Pfl01_5597

Organism
Pseudomonas fluorescens (strain Pf0-1)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
PFLU205922:G1G4S-5714-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Putative Rhs element Vgr proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Pfl01_5597Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPseudomonas fluorescens (strain Pf0-1)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri205922 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002704 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
205922.Pfl01_5597

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini386 – 451Phage_base_VInterPro annotationAdd BLAST66
Domaini687 – 806DUF2235InterPro annotationAdd BLAST120
Domaini833 – 925DUF2235InterPro annotationAdd BLAST93

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the VgrG protein family.ARBA annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
COG3501, Bacteria
COG4104, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_008342_0_0_6

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

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Gene3Di
2.40.50.230, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR018712, DUF2235
IPR006531, Gp5/Vgr_OB
IPR017847, T6SS_RhsGE_Vgr_subset
IPR006533, T6SS_Vgr_RhsGE
IPR037026, Vgr_OB-fold_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF09994, DUF2235, 2 hits
PF04717, Phage_base_V, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01646, vgr_GE, 1 hit
TIGR03361, VI_Rhs_Vgr, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q3K4H0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPGAVSSAHF TLQISAVRND FKVLAFEGTE TVSTLYAIHV ELVSEDPDFD
60 70 80 90 100
MEGLLGQTAF LQFGLNDEGI HGCIDDVLAG ESDKRLTRYR LTLVPSLHYL
110 120 130 140 150
QFSHDQRIYQ SQTVPQIITQ TLKRHGILVD AFTFHVQPLV AREYCTQYGE
160 170 180 190 200
SDFEFIQRLC AEEGIAWHHQ HSAQGHLLVF TDDAVFLPTL RPTPFRRENG
210 220 230 240 250
MVPEYPVVSS FSLRAATRTS RVTRRGYDLK RPTLLLESRF SAGFTPTLED
260 270 280 290 300
YRYPLLLDNE KRGKHLARQA LERHRADYEI AEGQSNQTTL RCGHLLELTE
310 320 330 340 350
HPRQNYNGLW LLLGVTHTGR QPQVLEESAS SETQSADGFT QGYRNTFCAI
360 370 380 390 400
PAEVVFRPPL PARRPPLVSQ TARVTGPKGE EIYCDEFGRV KVEFHWDRAE
410 420 430 440 450
LNSERSSCWV RVSSSWAGNG FGVVTLPRIG MEVVVTFVEG DPDKPLITGC
460 470 480 490 500
VINKVTPAPY KLPEHKTRTV LRSRSSPDTG GYSELMIEDR AGLELVYLRA
510 520 530 540 550
QRDMERQVLH DSRLAVGRDR WESIQGSSQT TAGKIITVEA GQQVQIKAGA
560 570 580 590 600
SVVLDAGASI TLKAGGHHIV IDRGGIFSST EIVAGGKTSA SGAADHPEAA
610 620 630 640 650
MAGALAAGLT ASSTQDPEDA ELEEEEEEVE LEDELPAGIT LRIGVFFDGT
660 670 680 690 700
GNNKANSETV AACYAPDANL AEAAEEIQKH CAAYGYDGNG NSPDNSYGND
710 720 730 740 750
VSNIVRLHEL YTDHAFDVLP ENTKQASLRV YIEGIGTTAD VDDSLYAQAT
760 770 780 790 800
GRGETGVLAR VEQSPEKIME QIRSLIDSNP NTLIERIEFD IFGFSRGAAA
810 820 830 840 850
ARHFANEVLK GKRSILAKAL PAGSPFLVSS FDWVSQSSIS INFIGLFDTV
860 870 880 890 900
AAIANPWLLD FTGANSRNPG LNLKLPEGCA NKVVHLVARD EHRENFALNS
910 920 930 940 950
LGEIDLVLPG AHSDLGGGYL PRAREKLLLS SPITSTISQS KEATRSAAYV
960 970 980 990 1000
SAEKEAFAWY TKGVIEDDAP GNQLRVALWE APVIQRLERG RSTPEPQKRV
1010 1020 1030 1040 1050
YAAAMIERPV HGELSLVYLR IMRELAVRAG VPLKLIPDRS ALNLPAELVP
1060 1070 1080 1090 1100
IHKKLQAYAL GESSVEGLTI KERALLRSRY IHLSAHWNAA KDFNNSDWSV
1110
VFINRPTKNK QRVVHPHE
Length:1,118
Mass (Da):123,278
Last modified:November 8, 2005 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i7EC954649B0701B2
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP000094 Genomic DNA Translation: ABA77334.1

NCBI Reference Sequences

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RefSeqi
WP_011336602.1, NC_007492.2

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ABA77334; ABA77334; Pfl01_5597

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
pfo:Pfl01_5597

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000094 Genomic DNA Translation: ABA77334.1
RefSeqiWP_011336602.1, NC_007492.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi205922.Pfl01_5597

Genome annotation databases

EnsemblBacteriaiABA77334; ABA77334; Pfl01_5597
KEGGipfo:Pfl01_5597

Phylogenomic databases

eggNOGiCOG3501, Bacteria
COG4104, Bacteria
HOGENOMiCLU_008342_0_0_6

Enzyme and pathway databases

BioCyciPFLU205922:G1G4S-5714-MONOMER

Family and domain databases

Gene3Di2.40.50.230, 1 hit
InterProiView protein in InterPro
IPR018712, DUF2235
IPR006531, Gp5/Vgr_OB
IPR017847, T6SS_RhsGE_Vgr_subset
IPR006533, T6SS_Vgr_RhsGE
IPR037026, Vgr_OB-fold_dom_sf
PfamiView protein in Pfam
PF09994, DUF2235, 2 hits
PF04717, Phage_base_V, 1 hit
TIGRFAMsiTIGR01646, vgr_GE, 1 hit
TIGR03361, VI_Rhs_Vgr, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ3K4H0_PSEPF
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q3K4H0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: December 2, 2020
This is version 91 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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