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UniProtKB - Q3JTD1 (Q3JTD1_BURP1)

Entry version 68 (07 Oct 2020)
Sequence version 1 (08 Nov 2005)
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Protein
Submitted name:

Rhs element Vgr protein subfamily, putative

Gene

BURPS1710b_1771

Organism
Burkholderia pseudomallei (strain 1710b)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...BioCyci		BPSE320372:G1G58-2051-MONOMER

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Rhs element Vgr protein subfamily, putativeImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:BURPS1710b_1771Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBurkholderia pseudomallei (strain 1710b)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri320372 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › pseudomallei group ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002700 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome I

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini493 – 539Phage_base_VInterPro annotationAdd BLAST47
Domaini590 – 690T6SS_VgrInterPro annotationAdd BLAST101
Domaini752 – 911DUF2345InterPro annotationAdd BLAST160

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni264 – 283DisorderedSequence analysisAdd BLAST20
Regioni468 – 496DisorderedSequence analysisAdd BLAST29
Regioni694 – 722DisorderedSequence analysisAdd BLAST29

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_004121_1_6_4

Identification of Orthologs from Complete Genome Data

More...OMAi		AGANWGG

Database of Orthologous Groups

More...OrthoDBi		1880900at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.40.50.230, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR018769, DUF2345_Vgr_C
IPR006531, Gp5/Vgr_OB
IPR028244, T6SS_Rhs_Vgr_dom
IPR006533, T6SS_Vgr_RhsGE
IPR037026, Vgr_OB-fold_dom_sf

Pfam protein domain database

More...Pfami		View protein in Pfam
PF10106, DUF2345, 1 hit
PF04717, Phage_base_V, 1 hit
PF13296, T6SS_Vgr, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR01646, vgr_GE, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q3JTD1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSIPTDVLQA LFGGWSQHDR FLWITTPLGA NALVAESLHG WEALDDGGFR 
        60         70         80         90        100
LQLTALAEHP SLPLAQLIGA PILIEWQAQE GRDARRPFHG HVIAAELVGY 
       110        120        130        140        150
NGGLARVRLV VEPWLTLLRQ RVDSYNYLDA SVVEISEQVF RRYARGVIAP 
       160        170        180        190        200
AWRWALADAA KYPKRSLTAQ AGESDFDFLE RLWAEEGIFY WFEHEGDARA 
       210        220        230        240        250
SSLGKHTLVL ADSNQRFAPD EPEIVGFHQT SDDDPQGCIQ HFMHARRWRI 
       260        270        280        290        300
GSVARASWDH RSLSTRPTGA RANGAVAPGE DRDVAGPYAY QTGAIGDRRA 
       310        320        330        340        350
QQQLDAQRVA ALRSEGRSTR RDLRPGLRFA IAHHPTLGVS DAFICLRVEH 
       360        370        380        390        400
SARANVDATV RSAIEQRLGA IASIAGAAPV PHGPASALNA ALGADTHHGG 
       410        420        430        440        450
SLMRDDAVYR NRFVALPAEQ TYRPLAASGH GARMHPVAVM PGAQTAIVVG 
       460        470        480        490        500
AGDPVHTDRD HRIRIQHHAQ RGENAASRDD HPHAANAPAN RGAGTWTRMM 
       510        520        530        540        550
TPVGGDNWGG VSVPRVGQEV WTEWLEGQPD RPVAVAALYN GRGNAHAQHN 
       560        570        580        590        600
AQAGGPSGST GNAAAWFAGN AHAAVLTGFK TQDMSMSQQG TGGYRQFMLD 
       610        620        630        640        650
DTAGQSSARL YTTDRNSGLT LGHVKQTQDN RRQADRGYGA ELATDAAGAL 
       660        670        680        690        700
RGGAGLLIST APGVSQMDAS APSQVLAQHR QTLQSLAALA HKQGAEPGGA 
       710        720        730        740        750
VPEAAGGAGA ASASTGAAAD KPLPAVDGIE QSREAIGATR EGSGGDTAGG 
       760        770        780        790        800
GGGGAIAWSK PHLVAHGEAG LAAMSAKSHV WVSGTETVLS AGQDVQLTAK 
       810        820        830        840        850
GKTSVVANHG ISLYTQGAAG DGRPVAGRGI ALHAASGAVS VQAQNAGKLS 
       860        870        880        890        900
ASAQKAVTLA SAQGSASVQA QQRVLLSAAK AYLKMEGNDI VVGAPGRADF 
       910        920        930        940 
KAAAHQLTGP KSAGASAQMP KSEPKLCEYK TRAADVAHEG TMKSAA
Length:946
Mass (Da):99,069
Last modified:November 8, 2005 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iAB8A66234B14ADC1
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CP000124 Genomic DNA Translation: ABA49096.1

NCBI Reference Sequences

More...RefSeqi		WP_004526758.1, NC_007434.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		ABA49096; ABA49096; BURPS1710b_1771

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		bpm:BURPS1710b_1771

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000124 Genomic DNA Translation: ABA49096.1
RefSeqiWP_004526758.1, NC_007434.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiABA49096; ABA49096; BURPS1710b_1771
KEGGibpm:BURPS1710b_1771

Phylogenomic databases

HOGENOMiCLU_004121_1_6_4
OMAiAGANWGG
OrthoDBi1880900at2

Enzyme and pathway databases

BioCyciBPSE320372:G1G58-2051-MONOMER

Family and domain databases

Gene3Di2.40.50.230, 1 hit
InterProiView protein in InterPro
IPR018769, DUF2345_Vgr_C
IPR006531, Gp5/Vgr_OB
IPR028244, T6SS_Rhs_Vgr_dom
IPR006533, T6SS_Vgr_RhsGE
IPR037026, Vgr_OB-fold_dom_sf
PfamiView protein in Pfam
PF10106, DUF2345, 1 hit
PF04717, Phage_base_V, 1 hit
PF13296, T6SS_Vgr, 1 hit
TIGRFAMsiTIGR01646, vgr_GE, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ3JTD1_BURP1
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q3JTD1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 8, 2005
Last sequence update: November 8, 2005
Last modified: October 7, 2020
This is version 68 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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