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Entry version 79 (13 Feb 2019)
Sequence version 1 (08 Nov 2005)
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Protein

Probable pectinesterase 55

Gene

PME55

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Acts in the modification of cell walls via demethylesterification of cell wall pectin.By similarity

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: pectin degradation

This protein is involved in step 1 of the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin.
Proteins known to be involved in the 5 steps of the subpathway in this organism are:
  1. Pectinesterase 5 (PME5), Probable pectinesterase/pectinesterase inhibitor 60 (PME60), Probable pectinesterase/pectinesterase inhibitor 64 (PME64), Putative pectinesterase/pectinesterase inhibitor 26 (PME26), Probable pectinesterase/pectinesterase inhibitor 39 (PME39), Probable pectinesterase/pectinesterase inhibitor 6 (PME6), Pectinesterase PPME1 (PPME1), Putative pectinesterase 52 (PME52), Probable pectinesterase 53 (PME53), Probable pectinesterase/pectinesterase inhibitor 54 (PME54), Putative pectinesterase 57 (PME57), Probable pectinesterase/pectinesterase inhibitor 58 (PME58), Probable pectinesterase/pectinesterase inhibitor 23 (PME23), Probable pectinesterase/pectinesterase inhibitor 35 (PME35), Probable pectinesterase/pectinesterase inhibitor 25 (PME25), Probable pectinesterase 29 (PME29), Probable pectinesterase 30 (PME30), Probable pectinesterase/pectinesterase inhibitor 33 (PME33), Probable pectinesterase/pectinesterase inhibitor 40 (PME40), Putative pectinesterase 11 (PME11), Probable pectinesterase 55 (PME55), Probable pectinesterase/pectinesterase inhibitor 16 (PME16), Probable pectinesterase/pectinesterase inhibitor 19 (PME19), Probable pectinesterase/pectinesterase inhibitor 61 (PME61), Probable pectinesterase/pectinesterase inhibitor 7 (PME7), Putative pectinesterase/pectinesterase inhibitor 38 (PME38), Probable pectinesterase/pectinesterase inhibitor 42 (PME42), Putative pectinesterase/pectinesterase inhibitor 45 (PME45), Probable pectinesterase/pectinesterase inhibitor 47 (PME47), Probable pectinesterase 48 (PME48), Probable pectinesterase/pectinesterase inhibitor 59 (PME59), Probable pectinesterase/pectinesterase inhibitor 20 (PME20), Pectinesterase QRT1 (QRT1), Probable pectinesterase 66 (PME66), Probable pectinesterase/pectinesterase inhibitor 51 (PME51), Putative pectinesterase/pectinesterase inhibitor 22 (PME22), Putative pectinesterase 63 (PME63), Pectinesterase/pectinesterase inhibitor 3 (PME3), Putative pectinesterase/pectinesterase inhibitor 43 (PME43), Probable pectinesterase/pectinesterase inhibitor 44 (PME44), Probable pectinesterase/pectinesterase inhibitor 46 (PME46), Pectinesterase 4 (PME4), Probable pectinesterase 50 (PME50), Probable pectinesterase/pectinesterase inhibitor 12 (PME12), Putative pectinesterase 14 (PME14), Pectinesterase 1 (PME1), Probable pectinesterase/pectinesterase inhibitor 21 (PME21), Putative pectinesterase/pectinesterase inhibitor 28 (PME28), Probable pectinesterase/pectinesterase inhibitor 32 (PME32), Probable pectinesterase/pectinesterase inhibitor 34 (PME34), Probable pectinesterase/pectinesterase inhibitor 41 (PME41), Probable pectinesterase 49 (PME49), Pectinesterase/pectinesterase inhibitor 18 (PME18), Probable pectinesterase 68 (PME68), Probable pectinesterase 15 (PME15), Probable pectinesterase 56 (PME56), Pectinesterase 2 (PME2), Pectinesterase 31 (PME31), Probable pectinesterase/pectinesterase inhibitor 36 (PME36), Putative pectinesterase 10 (PME10), Probable pectinesterase 67 (PME67), Probable pectinesterase 8 (PME8), Probable pectinesterase/pectinesterase inhibitor 13 (PME13), Probable pectinesterase/pectinesterase inhibitor 17 (PME17), Putative pectinesterase/pectinesterase inhibitor 24 (PME24), Probable pectinesterase/pectinesterase inhibitor VGDH2 (VGDH2), Pectinesterase (AXX17_At2g33420), Pectinesterase (AXX17_At2g22280), Pectinesterase, Pectinesterase (At3g14310), Pectinesterase (AXX17_At4g18720), Pectinesterase (AXX17_At5g20800), Pectinesterase (AXX17_At2g44790), Pectinesterase (AXX17_At2g33420), Pectinesterase (AXX17_At2g40510), Pectinesterase (AXX17_At4g00230), Uncharacterized protein (AXX17_At5g09310), Pectinesterase (AXX17_At1g11900), Pectinesterase (AXX17_At5g04430), Pectinesterase, Pectinesterase (AXX17_At5g47900), Pectinesterase (At3g49220), Pectinesterase (AXX17_At1g11920), Pectinesterase (AXX17_At3g43380), Pectinesterase (AXX17_At2g42790), Pectinesterase (AXX17_At4g02900), Pectinesterase (AXX17_At2g22270), Pectinesterase (AXX17_At3g30550), Pectinesterase (AXX17_At2g44780), Pectinesterase (AXX17_At3g41380), Pectinesterase (AXX17_At3g06710), Pectinesterase (AXX17_At4g02940), Plant invertase/pectin methylesterase inhibitor superfamily (At3g49220), Pectinesterase (AXX17_At3g14900), Pectinesterase (AXX17_At3g53530), Pectinesterase (AXX17_At4g02930), Pectinesterase (AXX17_At4g38050), Pectinesterase (AXX17_At1g24390), Pectinesterase (AXX17_At5g19650), Pectinesterase (AXX17_At1g11890), Pectinesterase (At1g53840), Pectinesterase (AXX17_At3g55110), Pectinesterase (AXX17_At2g45340), Pectinesterase (AXX17_At5g45990), Pectinesterase (At5g20860), Pectinesterase (AXX17_At3g56460), Pectinesterase, Pectinesterase (AXX17_At5g04420), Uncharacterized protein (AXX17_At5g27870), Pectinesterase (PMEPCRF), Pectinesterase (AXX17_At5g50310), Pectinesterase (AXX17_At3g31890), Pectinesterase (AXX17_At1g48300), Pectinesterase (At3g10720), Pectinesterase (At5g26810), Pectinesterase (AXX17_At3g10560), Pectinesterase (AXX17_At1g48290), Pectinesterase (AXX17_At5g52320), Pectinesterase (At4g15980), Pectinesterase (PMEPCRA), Pectinesterase (AXX17_At5g26780), PME26 (AXX17_At3g14890), Pectinesterase (AXX17_At4g38040), Pectinesterase (AXX17_At3g05190), Pectinesterase (PME44), Pectinesterase (F14I3.7), Pectinesterase, Pectinesterase (AXX17_At3g10570), Pectinesterase (AXX17_At4g06570), Pectinesterase (AXX17_At3g26070), Uncharacterized protein (AXX17_At5g64270), Pectinesterase (AXX17_At3g17940), Plant invertase/pectin methylesterase inhibitor superfamily (At5g09760), Uncharacterized protein (AXX17_At3g05180), Pectinesterase (AXX17_At1g04730), Pectinesterase (AXX17_At1g01970), Pectinesterase (AXX17_At5g50300), Pectinesterase (AXX17_At3g36460)
  2. Probable pectate lyase 4 (At1g30350), Probable pectate lyase 22 (At5g63180), Probable pectate lyase 3 (AT59), Probable pectate lyase 7 (At3g01270), Putative pectate lyase 2 (At1g11920), Probable pectate lyase 16 (At4g22080), Probable pectate lyase 6 (At2g02720), Probable pectate lyase 8 (At3g07010), Probable pectate lyase 5 (At1g67750), Probable pectate lyase 9 (At3g24230), Probable pectate lyase 12 (At3g53190), Putative pectate lyase 14 (At4g13210), Probable pectate lyase 15 (At4g13710), Putative pectate lyase 17 (At4g22090), Putative pectate lyase 21 (At5g55720), Probable pectate lyase 10 (At3g24670), Probable pectate lyase 18 (At4g24780), Probable pectate lyase 20 (At5g48900), Probable pectate lyase 19 (At5g15110), Probable pectate lyase 1 (At1g04680), Putative pectate lyase 11 (At3g27400), Probable pectate lyase 13 (PMR6), Pectate lyase (At3g07010), Pectate lyase (AXX17_At4g25610), Pectate lyase (AXX17_At5g47570), Pectate lyase (AXX17_At5g14600), Pectate lyase (AXX17_At5g62760), Pectate lyase (AXX17_At3g09180), Pectate lyase (AXX17_At3g26200), Pectate lyase (T26I12.20), Pectate lyase, Pectate lyase (AXX17_At4g14900), Pectate lyase (AXX17_At1g30780), Pectate lyase (At3g01270), Pectate lyase (At3g07010), Pectate lyase (At3g09540), Pectate lyase (AXX17_At4g25600), Pectate lyase (AXX17_At1g61710), Pectate lyase (At3g01270), Pectate lyase (AXX17_At1g15010), Pectate lyase (AXX17_At3g00310), Pectate lyase (AXX17_At2g01680), Pectate lyase (AXX17_At5g08800), Pectate lyase (AXX17_At3g06910), Pectate lyase (AXX17_At4g28670), Pectate lyase, Pectate lyase (At4g13710), Pectate lyase (At3g27400), Pectate lyase (At3g53190), Pectate lyase (AXX17_At1g04020), Pectate lyase (At4g13210), Pectate lyase (At3g55140), Pectate lyase, Pectate lyase (AXX17_At3g49720), Pectate lyase (At5g04310), Pectate lyase (At3g07010), Pectate lyase (AXX17_At3g49450), Pectate lyase (AXX17_At4g15660), Pectate lyase, Pectate lyase (AXX17_At5g03700), Pectate lyase (AXX17_At3g26720), Pectate lyase (AXX17_At1g12300), Pectate lyase (AXX17_At3g47590), Pectate lyase (AXX17_At3g29900), Pectate lyase (AXX17_At5g54880), Pectate lyase (At1g14420), Pectate lyase (F11F8_12), Pectate lyase (At5g04310), Pectate lyase (At5g09280), Pectate lyase (At3g55140), Pectate lyase
  3. no protein annotated in this organism
  4. no protein annotated in this organism
  5. no protein annotated in this organism
This subpathway is part of the pathway pectin degradation, which is itself part of Glycan metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 2-dehydro-3-deoxy-D-gluconate from pectin, the pathway pectin degradation and in Glycan metabolism.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections (‘Function’, ‘PTM / Processing’, ‘Pathology and Biotech’) according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei160Transition state stabilizerBy similarity1
<p>This subsection of the ‘Function’ section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei161Proton donorBy similarity1
Active sitei182NucleophileBy similarity1
<p>This subsection of the ‘Function’ section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei243SubstrateBy similarity1
Binding sitei245SubstrateBy similarity1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

  • aspartyl esterase activity Source: UniProtKB-KW
  • pectinesterase activity Source: GO_Central

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionAspartyl esterase, Hydrolase
Biological processCell wall biogenesis/degradation

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
ARA:AT5G18990-MONOMER

UniPathway: a resource for the exploration and annotation of metabolic pathways

More...
UniPathwayi
UPA00545;UER00823

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Probable pectinesterase 55 (EC:3.1.1.11)
Short name:
PE 55
Alternative name(s):
Pectin methylesterase 55
Short name:
AtPME55
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:PME55
Synonyms:ARATH55
Ordered Locus Names:At5g18990
ORF Names:T16G12.30
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT5G18990

The Arabidopsis Information Resource

More...
TAIRi
locus:2179659 AT5G18990

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell wall, Secreted

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 24Sequence analysisAdd BLAST24
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000037170325 – 330Probable pectinesterase 55Add BLAST306

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm_processing_section">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi38N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi52N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi257N-linked (GlcNAc...) asparagineSequence analysis1
Glycosylationi292N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q3E9D3

PRoteomics IDEntifications database

More...
PRIDEi
Q3E9D3

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q3E9D3 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT5G18990.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

Protein Model Portal of the PSI-Nature Structural Biology Knowledgebase

More...
ProteinModelPortali
Q3E9D3

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q3E9D3

Database of comparative protein structure models

More...
ModBasei
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the pectinesterase family.Curated

Keywords - Domaini

Signal

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
ENOG410IKXW Eukaryota
COG4677 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000217409

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q3E9D3

Identification of Orthologs from Complete Genome Data

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OMAi
EKVNIPY

Database of Orthologous Groups

More...
OrthoDBi
674407at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q3E9D3

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.160.20.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
IPR000070 Pectinesterase_cat

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01095 Pectinesterase, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF51126 SSF51126, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>.<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q3E9D3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MGTHRIILGL AALCCFCLPH LIEAKPFEVI VDQSGHGNFT TIQKAIDSVP
60 70 80 90 100
INNTHWFFIN VKAGLYREKI TIPQKKPFIV IVGAGKRSTR VEWDDHASLA
110 120 130 140 150
QSPTFATLAD NTVVKKITFA NSYNFPSNGK INKNPRVPAV AAFIGGDKSA
160 170 180 190 200
FYSVGFAGIQ DTLWDSDGRH YFHRCTIQGA VDFILGSGQS IYQSCVIQVL
210 220 230 240 250
GGQLGPGVTG YITAQGRTNA NDANGFVFIN CLVHGFGKAY LGRAWRPYSR
260 270 280 290 300
VIFYNSNLTD VVDPLGWWEW NYQGYEKQLT YAEHGCFGSG SNTSRRAKWV
310 320 330
KKLSASAVQH LADLSFINRG GWVEDLPIRV
Length:330
Mass (Da):36,460
Last modified:November 8, 2005 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iBFB86E7CD3D43263
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AC068809 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED92636.1

NCBI Reference Sequences

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RefSeqi
NP_197400.1, NM_121904.2

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT5G18990.1; AT5G18990.1; AT5G18990

Database of genes from NCBI RefSeq genomes

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GeneIDi
832017

Gramene; a comparative resource for plants

More...
Gramenei
AT5G18990.1; AT5G18990.1; AT5G18990

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT5G18990

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC068809 Genomic DNA No translation available.
CP002688 Genomic DNA Translation: AED92636.1
RefSeqiNP_197400.1, NM_121904.2

3D structure databases

ProteinModelPortaliQ3E9D3
SMRiQ3E9D3
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT5G18990.1

Proteomic databases

PaxDbiQ3E9D3
PRIDEiQ3E9D3

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT5G18990.1; AT5G18990.1; AT5G18990
GeneIDi832017
GrameneiAT5G18990.1; AT5G18990.1; AT5G18990
KEGGiath:AT5G18990

Organism-specific databases

AraportiAT5G18990
TAIRilocus:2179659 AT5G18990

Phylogenomic databases

eggNOGiENOG410IKXW Eukaryota
COG4677 LUCA
HOGENOMiHOG000217409
InParanoidiQ3E9D3
OMAiEKVNIPY
OrthoDBi674407at2759
PhylomeDBiQ3E9D3

Enzyme and pathway databases

UniPathwayi
UPA00545;UER00823

BioCyciARA:AT5G18990-MONOMER

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q3E9D3

Gene expression databases

GenevisibleiQ3E9D3 AT

Family and domain databases

Gene3Di2.160.20.10, 1 hit
InterProiView protein in InterPro
IPR012334 Pectin_lyas_fold
IPR011050 Pectin_lyase_fold/virulence
IPR000070 Pectinesterase_cat
PfamiView protein in Pfam
PF01095 Pectinesterase, 1 hit
SUPFAMiSSF51126 SSF51126, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPME55_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q3E9D3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 5, 2009
Last sequence update: November 8, 2005
Last modified: February 13, 2019
This is version 79 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  3. PATHWAY comments
    Index of metabolic and biosynthesis pathways
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