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Protein

tRNA pseudouridine synthase D

Gene

truD

Organism
Xanthomonas campestris pv. vesicatoria (strain 85-10)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs.UniRule annotation

Catalytic activityi

tRNA uridine(13) = tRNA pseudouridine(13).UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei80NucleophileUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomerase
Biological processtRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase DUniRule annotation (EC:5.4.99.27UniRule annotation)
Alternative name(s):
tRNA pseudouridine(13) synthaseUniRule annotation
tRNA pseudouridylate synthase DUniRule annotation
tRNA-uridine isomerase DUniRule annotation
Gene namesi
Name:truDUniRule annotation
Ordered Locus Names:XCV1756
OrganismiXanthomonas campestris pv. vesicatoria (strain 85-10)
Taxonomic identifieri316273 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas
Proteomesi
  • UP000007069 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002301571 – 369tRNA pseudouridine synthase DAdd BLAST369

Interactioni

Protein-protein interaction databases

STRINGi316273.XCV1756

Structurei

3D structure databases

ProteinModelPortaliQ3BUS6
SMRiQ3BUS6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini156 – 318TRUDUniRule annotationAdd BLAST163

Sequence similaritiesi

Belongs to the pseudouridine synthase TruD family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4106NZV Bacteria
COG0585 LUCA
HOGENOMiHOG000224848
KOiK06176
OMAiLWLWVEK
OrthoDBiPOG091H03KK

Family and domain databases

HAMAPiMF_01082 TruD, 1 hit
InterProiView protein in InterPro
IPR020103 PsdUridine_synth_cat_dom_sf
IPR001656 PsdUridine_synth_TruD
IPR020119 PsdUridine_synth_TruD_CS
IPR011760 PsdUridine_synth_TruD_insert
PANTHERiPTHR13326 PTHR13326, 2 hits
PfamiView protein in Pfam
PF01142 TruD, 2 hits
SUPFAMiSSF55120 SSF55120, 1 hit
PROSITEiView protein in PROSITE
PS50984 TRUD, 1 hit
PS01268 UPF0024, 1 hit

Sequencei

Sequence statusi: Complete.

Q3BUS6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSETSLLPRA HGAAVLSAAM RSTPDDFQLD ELPAFEPSGE GEHLLLTVRK
60 70 80 90 100
RGQNTAYIAK QLAHWAGIAE MGVSYAGLKD RHAVTTQRFS VHLPKRIAPD
110 120 130 140 150
IAALDDAQMQ VVQSAWHNRK LQRGALHGNR FVLTLRQVQG EREAIEQRLQ
160 170 180 190 200
AIAARGIPNW FGEQRFGRDG ANVAAALAMF GHVQAEDGTL LPAPTSRRRL
210 220 230 240 250
RNDQRSMLLS AARSVLFNRV LGARVAQGSW DSALQGEAWM LDGSRSVFGP
260 270 280 290 300
EPWSEALAER LARFDIHPSG PLWGVGDLRS ADQAAALEQG ALSDPQSEAL
310 320 330 340 350
RQGLEAAGLK QERRALRLRP QGLDYRWLEA QTLQLEFALP PGCYATAVLW
360
ELGDVTDAGR FNVGMRADA
Length:369
Mass (Da):40,459
Last modified:November 22, 2005 - v1
Checksum:i1D3414B155FE6E40
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM039952 Genomic DNA Translation: CAJ23433.1
RefSeqiWP_011347102.1, NZ_CP017190.1

Genome annotation databases

EnsemblBacteriaiCAJ23433; CAJ23433; XCV1756
KEGGixcv:XCV1756

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM039952 Genomic DNA Translation: CAJ23433.1
RefSeqiWP_011347102.1, NZ_CP017190.1

3D structure databases

ProteinModelPortaliQ3BUS6
SMRiQ3BUS6
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi316273.XCV1756

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ23433; CAJ23433; XCV1756
KEGGixcv:XCV1756

Phylogenomic databases

eggNOGiENOG4106NZV Bacteria
COG0585 LUCA
HOGENOMiHOG000224848
KOiK06176
OMAiLWLWVEK
OrthoDBiPOG091H03KK

Family and domain databases

HAMAPiMF_01082 TruD, 1 hit
InterProiView protein in InterPro
IPR020103 PsdUridine_synth_cat_dom_sf
IPR001656 PsdUridine_synth_TruD
IPR020119 PsdUridine_synth_TruD_CS
IPR011760 PsdUridine_synth_TruD_insert
PANTHERiPTHR13326 PTHR13326, 2 hits
PfamiView protein in Pfam
PF01142 TruD, 2 hits
SUPFAMiSSF55120 SSF55120, 1 hit
PROSITEiView protein in PROSITE
PS50984 TRUD, 1 hit
PS01268 UPF0024, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiTRUD_XANC5
AccessioniPrimary (citable) accession number: Q3BUS6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 4, 2006
Last sequence update: November 22, 2005
Last modified: November 7, 2018
This is version 68 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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Main funding by: National Institutes of Health

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