Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 68 (07 Oct 2020)
Sequence version 1 (22 Nov 2005)
Previous versions | rss
Help videoAdd a publicationFeedback
Protein
Submitted name:

Type VI secretion protein EvpB

Gene

Bcep18194_A3560

Organism
Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Type VI secretion protein EvpBImported
Submitted name:
Type VI secretion system contractile sheath large subunitImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Bcep18194_A3560Imported
ORF Names:BLA13014_03700Imported, BLA17378_04675Imported, BLA18109_04884Imported, BLA18112_04828Imported, BLA18628_05433Imported, BLA6860_02682Imported, BLA6863_02191Imported, BLA6992_06118Imported, BLA6993_06725Imported, BLA9940_02639Imported, CVS37_02620Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBurkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri482957 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaBetaproteobacteriaBurkholderialesBurkholderiaceaeBurkholderiaBurkholderia cepacia complex
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000494260 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Unassembled WGS sequence
  • UP000494168 Componenti: Unassembled WGS sequence
  • UP000494170 Componenti: Unassembled WGS sequence
  • UP000494081 Componenti: Unassembled WGS sequence
  • UP000494129 Componenti: Unassembled WGS sequence
  • UP000494274 Componenti: Unassembled WGS sequence
  • UP000494120 Componenti: Unassembled WGS sequence
  • UP000280305 Componenti: Chromosome 1
  • UP000002705 Componenti: Chromosome 1
  • UP000494177 Componenti: Unassembled WGS sequence
  • UP000494261 Componenti: Unassembled WGS sequence
  • UP000494166 Componenti: Unassembled WGS sequence

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_018386_1_0_4

KEGG Orthology (KO)

More...
KOi
K11900

Identification of Orthologs from Complete Genome Data

More...
OMAi
ISAMLPY

Database of Orthologous Groups

More...
OrthoDBi
683477at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR010269, T6SS_TssC-like

The PANTHER Classification System

More...
PANTHERi
PTHR35565, PTHR35565, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05943, VipB, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR03355, VI_chp_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q39K55-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MNQQTAAAQA SGADYAAGTS LLDDIVEKSK VAKSDSEHAR AKDLIGELVH
60 70 80 90 100
QVLDGTVIVS DNLSATIDAR VAELDRLIST QLSAVMHAPE FQRLESTWRG
110 120 130 140 150
MDYLVKESNT GQTIKIKALH APKRDLVRDF KGASEFDQSA LFKKVYEEEF
160 170 180 190 200
GTFGGSPFGA LIGDYEISRQ PEDMYFIEQM SHVAAAAHAP FIASASPELL
210 220 230 240 250
GLESFSDLGK PRDLGKVFDT VEYAKWKSFR DAEDSRYVGL TLPRFLGRLP
260 270 280 290 300
FNPKDGQTAE NFNFVEDVDG TDHDKYLWCN AAWAFAARLT AAFDDFGWCA
310 320 330 340 350
AIRGVEGGGL VEDLPTHTFK TDDGEVALKC PTEIAITDRR EKELSDLGFI
360 370 380 390 400
PLVHCKNSDY AAFFAAQSVQ KPKKYSTDSA NANAVLSAQL QYIFSVSRVA
410 420 430 440 450
HYLKAMMRDK IGSFASAQNV ETFLNRWISQ YVLLDDNASQ EQKAQFPLRE
460 470 480 490
ASIQVSEIPG KPGSYRSVAF LRPHFQLDEL SISLRLVADL PKPANS
Length:496
Mass (Da):54,827
Last modified:November 22, 2005 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB39D7B594AD2EEB5
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP000151 Genomic DNA Translation: ABB07161.1
CP024943 Genomic DNA Translation: AYQ37122.1
CABVPY010000011 Genomic DNA Translation: VWB48371.1
CABVPZ010000014 Genomic DNA Translation: VWB57958.1
CABVQC010000024 Genomic DNA Translation: VWB80512.1
CABVQB010000027 Genomic DNA Translation: VWC36069.1
CABVQF010000008 Genomic DNA Translation: VWC57727.1
CABVQG010000017 Genomic DNA Translation: VWC92474.1
CABVQH010000018 Genomic DNA Translation: VWD05825.1
CABVQI010000016 Genomic DNA Translation: VWD13456.1
CABVQM010000029 Genomic DNA Translation: VWD42524.1
CABWIJ010000017 Genomic DNA Translation: VWM16692.1

NCBI Reference Sequences

More...
RefSeqi
WP_011350759.1, NZ_CP024943.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ABB07161; ABB07161; Bcep18194_A3560

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
bur:Bcep18194_A3560

Pathosystems Resource Integration Center (PATRIC)

More...
PATRICi
fig|482957.22.peg.407

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000151 Genomic DNA Translation: ABB07161.1
CP024943 Genomic DNA Translation: AYQ37122.1
CABVPY010000011 Genomic DNA Translation: VWB48371.1
CABVPZ010000014 Genomic DNA Translation: VWB57958.1
CABVQC010000024 Genomic DNA Translation: VWB80512.1
CABVQB010000027 Genomic DNA Translation: VWC36069.1
CABVQF010000008 Genomic DNA Translation: VWC57727.1
CABVQG010000017 Genomic DNA Translation: VWC92474.1
CABVQH010000018 Genomic DNA Translation: VWD05825.1
CABVQI010000016 Genomic DNA Translation: VWD13456.1
CABVQM010000029 Genomic DNA Translation: VWD42524.1
CABWIJ010000017 Genomic DNA Translation: VWM16692.1
RefSeqiWP_011350759.1, NZ_CP024943.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiABB07161; ABB07161; Bcep18194_A3560
KEGGibur:Bcep18194_A3560
PATRICifig|482957.22.peg.407

Phylogenomic databases

HOGENOMiCLU_018386_1_0_4
KOiK11900
OMAiISAMLPY
OrthoDBi683477at2

Family and domain databases

InterProiView protein in InterPro
IPR010269, T6SS_TssC-like
PANTHERiPTHR35565, PTHR35565, 1 hit
PfamiView protein in Pfam
PF05943, VipB, 1 hit
TIGRFAMsiTIGR03355, VI_chp_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ39K55_BURL3
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q39K55
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: November 22, 2005
Last sequence update: November 22, 2005
Last modified: October 7, 2020
This is version 68 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again