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UniProtKB - Q39827 (SPE1_SOYBN)
Protein
Arginine decarboxylase
Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Functioni
Catalytic activityi
- EC:4.1.1.19
Cofactori
Protein has several cofactor binding sites:: agmatine biosynthesis Pathwayi
This protein is involved in step 1 of the subpathway that synthesizes agmatine from L-arginine. This subpathway is part of the pathway agmatine biosynthesis, which is itself part of Amine and polyamine biosynthesis.View all proteins of this organism that are known to be involved in the subpathway that synthesizes agmatine from L-arginine, the pathway agmatine biosynthesis and in Amine and polyamine biosynthesis.
GO - Molecular functioni
- arginine decarboxylase activity Source: GO_Central
GO - Biological processi
- arginine catabolic process Source: InterPro
- putrescine biosynthetic process from arginine Source: GO_Central
- spermidine biosynthetic process Source: UniProtKB-KW
Keywordsi
Molecular function | Decarboxylase, Lyase |
Biological process | Putrescine biosynthesis, Spermidine biosynthesis |
Ligand | Magnesium, Pyridoxal phosphate |
Enzyme and pathway databases
BRENDAi | 4.1.1.19, 2483 |
SABIO-RKi | Q39827 |
UniPathwayi | UPA00186;UER00284 |
Names & Taxonomyi
Protein namesi | |
Organismi | Glycine max (Soybean) (Glycine hispida) |
Taxonomic identifieri | 3847 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › eudicotyledons › Gunneridae › Pentapetalae › rosids › fabids › Fabales › Fabaceae › Papilionoideae › 50 kb inversion clade › NPAAA clade › indigoferoid/millettioid clade › Phaseoleae › Glycine › Glycine subgen. Soja |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000149954 | 1 – 692 | Arginine decarboxylaseAdd BLAST | 692 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Modified residuei | 153 | N6-(pyridoxal phosphate)lysineBy similarity | 1 |
Proteomic databases
PRIDEi | Q39827 |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 337 – 347 | Substrate-bindingBy similarityAdd BLAST | 11 |
Sequence similaritiesi
Phylogenomic databases
eggNOGi | ENOG502QTXD, Eukaryota |
Family and domain databases
CDDi | cd06830, PLPDE_III_ADC, 1 hit |
Gene3Di | 2.40.37.10, 1 hit 3.20.20.10, 1 hit |
InterProi | View protein in InterPro IPR009006, Ala_racemase/Decarboxylase_C IPR002985, Arg_decrbxlase IPR022657, De-COase2_CS IPR022644, De-COase2_N IPR022653, De-COase2_pyr-phos_BS IPR000183, Orn/DAP/Arg_de-COase IPR029066, PLP-binding_barrel |
PANTHERi | PTHR43295, PTHR43295, 1 hit |
Pfami | View protein in Pfam PF02784, Orn_Arg_deC_N, 1 hit |
PIRSFi | PIRSF001336, Arg_decrbxlase, 1 hit |
PRINTSi | PR01180, ARGDCRBXLASE PR01179, ODADCRBXLASE |
SUPFAMi | SSF50621, SSF50621, 1 hit SSF51419, SSF51419, 1 hit |
TIGRFAMsi | TIGR01273, speA, 1 hit |
PROSITEi | View protein in PROSITE PS00878, ODR_DC_2_1, 1 hit PS00879, ODR_DC_2_2, 1 hit |
i Sequence
Sequence statusi: Complete.
Q39827-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MPVLACCVDA AAPPGYAFAG DISFPAPIAF TGVPPATADD TNNSNNHWSP
60 70 80 90 100
SLSAALYNVD GWGGPYFAVN TAGNISVRPH GSDTVSHQEI DLLKIVKKAS
110 120 130 140 150
DPKSLGGLSL QLPLIARFPD VLKNRLESLQ SAFDYAIQSG GYESHYQGVY
160 170 180 190 200
PVKCNQDRFV VEDIVKFGSP FRFGLEAGSK PELLLAMSCL CKGNPDGLLI
210 220 230 240 250
CNGFKDAEYI SLALVANKLA LNTVIVVEQE EEVDLIVELS KKLCIKPVIG
260 270 280 290 300
LRAKLRTKHS GHFGGIFRRR GKFGLTTARV LRVVKNLDLA GMLDCLQLLH
310 320 330 340 350
FHIGSQIPST ALLADGVGEA AQIYCELVRL GANMRVIDIG GGLGIDYDGS
360 370 380 390 400
KSCDSDISVE YGLEEYAAAV VHAVQCVCDR SVKHPVICSE SGRAIVSHHS
410 420 430 440 450
VLIFEAVGTS STNGGGAPPA LSAHYLAEEL SEDYGYLSEL AFRGDYETCL
460 470 480 490 500
VYTEEMKERC VEQFKQGTVC MEQLAAVEGL CELVRKAVGA AESVRRYHVN
510 520 530 540 550
LSIFTSVPDA WGIEQVFPII PIHRLDEKPS VRGILSDLTC DSDGKIDKFI
560 570 580 590 600
NGESSLPLHE MEGGRTYYLG MFLGGAYEEA LGGVHNLFGG PSVVRVSQSD
610 620 630 640 650
GPHSFAVTRA VPGPSCGDVL RVMQHQPELM FETLKHRAQE YVSHDNAAAL
660 670 680 690
LAAGLARTFD RMPYLLSLSS FVADDVAAAV PAAQDLGEQW SY
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U35367 mRNA Translation: AAD09204.1 |
PIRi | T06593 |
RefSeqi | NP_001238359.1, NM_001251430.1 |
Genome annotation databases
GeneIDi | 548071 |
KEGGi | gmx:548071 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | U35367 mRNA Translation: AAD09204.1 |
PIRi | T06593 |
RefSeqi | NP_001238359.1, NM_001251430.1 |
3D structure databases
SMRi | Q39827 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 3847.GLYMA06G00990.2 |
Proteomic databases
PRIDEi | Q39827 |
Genome annotation databases
GeneIDi | 548071 |
KEGGi | gmx:548071 |
Phylogenomic databases
eggNOGi | ENOG502QTXD, Eukaryota |
Enzyme and pathway databases
UniPathwayi | UPA00186;UER00284 |
BRENDAi | 4.1.1.19, 2483 |
SABIO-RKi | Q39827 |
Family and domain databases
CDDi | cd06830, PLPDE_III_ADC, 1 hit |
Gene3Di | 2.40.37.10, 1 hit 3.20.20.10, 1 hit |
InterProi | View protein in InterPro IPR009006, Ala_racemase/Decarboxylase_C IPR002985, Arg_decrbxlase IPR022657, De-COase2_CS IPR022644, De-COase2_N IPR022653, De-COase2_pyr-phos_BS IPR000183, Orn/DAP/Arg_de-COase IPR029066, PLP-binding_barrel |
PANTHERi | PTHR43295, PTHR43295, 1 hit |
Pfami | View protein in Pfam PF02784, Orn_Arg_deC_N, 1 hit |
PIRSFi | PIRSF001336, Arg_decrbxlase, 1 hit |
PRINTSi | PR01180, ARGDCRBXLASE PR01179, ODADCRBXLASE |
SUPFAMi | SSF50621, SSF50621, 1 hit SSF51419, SSF51419, 1 hit |
TIGRFAMsi | TIGR01273, speA, 1 hit |
PROSITEi | View protein in PROSITE PS00878, ODR_DC_2_1, 1 hit PS00879, ODR_DC_2_2, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | SPE1_SOYBN | |
Accessioni | Q39827Primary (citable) accession number: Q39827 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | December 15, 1998 |
Last sequence update: | November 1, 1996 | |
Last modified: | February 23, 2022 | |
This is version 107 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- PATHWAY comments
Index of metabolic and biosynthesis pathways - SIMILARITY comments
Index of protein domains and families