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Protein

Arginine decarboxylase

Gene
N/A
Organism
Glycine max (Soybean) (Glycine hispida)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Catalytic activityi

L-arginine = agmatine + CO2.

Cofactori

Protein has several cofactor binding sites:

Pathwayi: agmatine biosynthesis

This protein is involved in step 1 of the subpathway that synthesizes agmatine from L-arginine.
Proteins known to be involved in this subpathway in this organism are:
  1. Arginine decarboxylase, Arginine decarboxylase (GLYMA_06G007500), Arginine decarboxylase (100793552)
This subpathway is part of the pathway agmatine biosynthesis, which is itself part of Amine and polyamine biosynthesis.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes agmatine from L-arginine, the pathway agmatine biosynthesis and in Amine and polyamine biosynthesis.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDecarboxylase, Lyase
Biological processPutrescine biosynthesis, Spermidine biosynthesis
LigandMagnesium, Pyridoxal phosphate

Enzyme and pathway databases

BRENDAi4.1.1.19 2483
SABIO-RKiQ39827
UniPathwayi
UPA00186;UER00284

Names & Taxonomyi

Protein namesi
Recommended name:
Arginine decarboxylase (EC:4.1.1.19)
Short name:
ADC
Short name:
ARGDC
OrganismiGlycine max (Soybean) (Glycine hispida)
Taxonomic identifieri3847 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsfabidsFabalesFabaceaePapilionoideae50 kb inversion cladeNPAAA cladeindigoferoid/millettioid cladePhaseoleaeGlycineSoja
Proteomesi
  • UP000008827 Componenti: Unplaced

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001499541 – 692Arginine decarboxylaseAdd BLAST692

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei153N6-(pyridoxal phosphate)lysineBy similarity1

Interactioni

Protein-protein interaction databases

STRINGi3847.GLYMA06G00990.1

Structurei

3D structure databases

ProteinModelPortaliQ39827
SMRiQ39827
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni337 – 347Substrate-bindingBy similarityAdd BLAST11

Sequence similaritiesi

Phylogenomic databases

eggNOGiENOG410IKSU Eukaryota
COG1166 LUCA
KOiK01583

Family and domain databases

CDDicd06830 PLPDE_III_ADC, 1 hit
Gene3Di2.40.37.10, 3 hits
3.20.20.10, 1 hit
InterProiView protein in InterPro
IPR009006 Ala_racemase/Decarboxylase_C
IPR002985 Arg_decrbxlase
IPR022657 De-COase2_CS
IPR022644 De-COase2_N
IPR022653 De-COase2_pyr-phos_BS
IPR000183 Orn/DAP/Arg_de-COase
IPR029066 PLP-binding_barrel
PANTHERiPTHR43295 PTHR43295, 1 hit
PfamiView protein in Pfam
PF02784 Orn_Arg_deC_N, 1 hit
PIRSFiPIRSF001336 Arg_decrbxlase, 1 hit
PRINTSiPR01180 ARGDCRBXLASE
PR01179 ODADCRBXLASE
SUPFAMiSSF50621 SSF50621, 1 hit
SSF51419 SSF51419, 1 hit
TIGRFAMsiTIGR01273 speA, 1 hit
PROSITEiView protein in PROSITE
PS00878 ODR_DC_2_1, 1 hit
PS00879 ODR_DC_2_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q39827-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MPVLACCVDA AAPPGYAFAG DISFPAPIAF TGVPPATADD TNNSNNHWSP
60 70 80 90 100
SLSAALYNVD GWGGPYFAVN TAGNISVRPH GSDTVSHQEI DLLKIVKKAS
110 120 130 140 150
DPKSLGGLSL QLPLIARFPD VLKNRLESLQ SAFDYAIQSG GYESHYQGVY
160 170 180 190 200
PVKCNQDRFV VEDIVKFGSP FRFGLEAGSK PELLLAMSCL CKGNPDGLLI
210 220 230 240 250
CNGFKDAEYI SLALVANKLA LNTVIVVEQE EEVDLIVELS KKLCIKPVIG
260 270 280 290 300
LRAKLRTKHS GHFGGIFRRR GKFGLTTARV LRVVKNLDLA GMLDCLQLLH
310 320 330 340 350
FHIGSQIPST ALLADGVGEA AQIYCELVRL GANMRVIDIG GGLGIDYDGS
360 370 380 390 400
KSCDSDISVE YGLEEYAAAV VHAVQCVCDR SVKHPVICSE SGRAIVSHHS
410 420 430 440 450
VLIFEAVGTS STNGGGAPPA LSAHYLAEEL SEDYGYLSEL AFRGDYETCL
460 470 480 490 500
VYTEEMKERC VEQFKQGTVC MEQLAAVEGL CELVRKAVGA AESVRRYHVN
510 520 530 540 550
LSIFTSVPDA WGIEQVFPII PIHRLDEKPS VRGILSDLTC DSDGKIDKFI
560 570 580 590 600
NGESSLPLHE MEGGRTYYLG MFLGGAYEEA LGGVHNLFGG PSVVRVSQSD
610 620 630 640 650
GPHSFAVTRA VPGPSCGDVL RVMQHQPELM FETLKHRAQE YVSHDNAAAL
660 670 680 690
LAAGLARTFD RMPYLLSLSS FVADDVAAAV PAAQDLGEQW SY
Length:692
Mass (Da):74,595
Last modified:November 1, 1996 - v1
Checksum:i31BA9C207B5A6EF3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U35367 mRNA Translation: AAD09204.1
PIRiT06593
RefSeqiNP_001238359.1, NM_001251430.1
UniGeneiGma.18066

Genome annotation databases

GeneIDi548071
KEGGigmx:548071

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U35367 mRNA Translation: AAD09204.1
PIRiT06593
RefSeqiNP_001238359.1, NM_001251430.1
UniGeneiGma.18066

3D structure databases

ProteinModelPortaliQ39827
SMRiQ39827
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3847.GLYMA06G00990.1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi548071
KEGGigmx:548071

Phylogenomic databases

eggNOGiENOG410IKSU Eukaryota
COG1166 LUCA
KOiK01583

Enzyme and pathway databases

UniPathwayi
UPA00186;UER00284

BRENDAi4.1.1.19 2483
SABIO-RKiQ39827

Family and domain databases

CDDicd06830 PLPDE_III_ADC, 1 hit
Gene3Di2.40.37.10, 3 hits
3.20.20.10, 1 hit
InterProiView protein in InterPro
IPR009006 Ala_racemase/Decarboxylase_C
IPR002985 Arg_decrbxlase
IPR022657 De-COase2_CS
IPR022644 De-COase2_N
IPR022653 De-COase2_pyr-phos_BS
IPR000183 Orn/DAP/Arg_de-COase
IPR029066 PLP-binding_barrel
PANTHERiPTHR43295 PTHR43295, 1 hit
PfamiView protein in Pfam
PF02784 Orn_Arg_deC_N, 1 hit
PIRSFiPIRSF001336 Arg_decrbxlase, 1 hit
PRINTSiPR01180 ARGDCRBXLASE
PR01179 ODADCRBXLASE
SUPFAMiSSF50621 SSF50621, 1 hit
SSF51419 SSF51419, 1 hit
TIGRFAMsiTIGR01273 speA, 1 hit
PROSITEiView protein in PROSITE
PS00878 ODR_DC_2_1, 1 hit
PS00879 ODR_DC_2_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiSPE1_SOYBN
AccessioniPrimary (citable) accession number: Q39827
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: November 1, 1996
Last modified: September 12, 2018
This is version 94 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
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Main funding by: National Institutes of Health

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