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Entry version 161 (17 Jun 2020)
Sequence version 2 (05 Feb 2008)
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Protein

Homeobox protein LUMINIDEPENDENS

Gene

LD

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression.1 Publication

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position and type of each DNA-binding domain present within the protein.<p><a href='/help/dna_bind' target='_top'>More...</a></p>DNA bindingi63 – 123HomeoboxPROSITE-ProRule annotationAdd BLAST61

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDevelopmental protein, DNA-binding
Biological processDifferentiation, Flowering

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Homeobox protein LUMINIDEPENDENS
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:LD
Ordered Locus Names:At4g02560
ORF Names:T10P11.15
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 4

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT4G02560

The Arabidopsis Information Resource

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TAIRi
locus:2005532 AT4G02560

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Plants show late flowering phenotype (mutants LD-1 and LD-3).1 Publication

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000491691 – 953Homeobox protein LUMINIDEPENDENSAdd BLAST953

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

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PaxDbi
Q38796

PRoteomics IDEntifications database

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PRIDEi
Q38796

ProteomicsDB: a multi-organism proteome resource

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ProteomicsDBi
238784

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in shoot apex, root apex, leaf primordia and floral buds.

<p>This subsection of the 'Expression' section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified 'at the protein level'.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

Accumulates prior to flowering in the vegetative shoot apical meristem and after flowering in floral meristems.

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
Q38796 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
Q38796 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Interacts with SUF4.

1 Publication

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

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BioGRIDi
13195, 7 interactors

Protein interaction database and analysis system

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IntActi
Q38796, 2 interactors

STRING: functional protein association networks

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STRINGi
3702.AT4G02560.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q38796

Database of comparative protein structure models

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ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati498 – 50215
Repeati507 – 51125
Repeati516 – 52035
Repeati525 – 52945
Repeati534 – 53855

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni498 – 5385 X 5 AA repeats of Q-P-V-N-GAdd BLAST41

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi648 – 941Gln/Ser-richAdd BLAST294

Keywords - Domaini

Homeobox, Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
ENOG410IMKC Eukaryota
ENOG4111YQX LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_008897_0_0_1

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
Q38796

Identification of Orthologs from Complete Genome Data

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OMAi
HAQVIEP

Database of Orthologous Groups

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OrthoDBi
143242at2759

Database for complete collections of gene phylogenies

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PhylomeDBi
Q38796

Family and domain databases

Conserved Domains Database

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CDDi
cd00086 homeodomain, 1 hit

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR009057 Homeobox-like_sf
IPR001356 Homeobox_dom
IPR035441 TFIIS/LEDGF_dom_sf

Simple Modular Architecture Research Tool; a protein domain database

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SMARTi
View protein in SMART
SM00389 HOX, 1 hit

Superfamily database of structural and functional annotation

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SUPFAMi
SSF46689 SSF46689, 1 hit
SSF47676 SSF47676, 1 hit

PROSITE; a protein domain and family database

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PROSITEi
View protein in PROSITE
PS50071 HOMEOBOX_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q38796-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDAFKEEIEI GSSVESLMEL LDSQKVLFHS QIDQLQDVVV AQCKLTGVNP
60 70 80 90 100
LAQEMAAGAL SIKIGKRPRD LLNPKAVKYL QAVFAIKDAI SKRESREISA
110 120 130 140 150
LFGITVAQVR EFFVTQKTRV RKQVRLSREK VVMSNTHALQ DDGVPENNNA
160 170 180 190 200
TNHVEPVPLN SIHPEACSIS WGEGETVALI PPEDIPPDIS DSDKYFVENI
210 220 230 240 250
FSLLRKEETF SGQVKLMEWI MQIQDASVLI WFLSKGGVLI LTTWLSQAAS
260 270 280 290 300
EEQTSVLLLI LKVLCHLPLH KASPENMSAI LQSVNGLRFY RISDISNRAK
310 320 330 340 350
GLLSRWTKLF AKIQAMKKQN RNSSQIDSQS QLLLKQSIAE IMGDSSNPED
360 370 380 390 400
ILSLSNGKSE NVRRIESSQG PKLLLTSADD STKKHMLGSN PSYNKERRKV
410 420 430 440 450
QMVEQPGQKA AGKSPQTVRI GTSGRSRPMS ADDIQKAKMR ALYMQSKNSK
460 470 480 490 500
KDPLPSAIGD SKIVAPEKPL ALHSAKDSPP IQNNEAKTED TPVLSTVQPV
510 520 530 540 550
NGFSTIQPVN GPSAVQPVNG PLAVQPVNGP SALQPVNGPS AVIVPVQADE
560 570 580 590 600
IKKPSTPPKS ISSKVGVMMK MSSQTILKNC KRKQIDWHVP PGMELDELWR
610 620 630 640 650
VAAGGNSKEA DVQRNRNRRE RETTYQSLQT IPLNPKEPWD REMDYDDSLT
660 670 680 690 700
PEIPSQQPPE ESLTEPQDSL DERRIAAGAA TTSSSLSSPE PDLELLAALL
710 720 730 740 750
KNPDLVYALT SGKPSNLAGQ DMVKLLDVIK TGAPNSSSSS NKQVEERVEV
760 770 780 790 800
SLPSPTPSTN PGMSGWGQEG IRNPFSRQNQ VGTAVARSGT QLRVGSMQWH
810 820 830 840 850
QTNEQSIPRH APSAYSNSIT LAHTEREQQQ YMQPKLHHNL HFQQQQQQPI
860 870 880 890 900
STTSYAVREP VGQMGTGTSS SWRSQQSQNS YYSHQENEIA SASQVTSYQG
910 920 930 940 950
NSQYMSSNPG YESWSPDNSP SRNQLNMRGQ QQQASRKHDS STHPYWNQNK

RWR
Length:953
Mass (Da):105,415
Last modified:February 5, 2008 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i0DBFF4556190BA77
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti320N → I in AAK00674 (Ref. 7) Curated1
Sequence conflicti650T → S (PubMed:7907507).Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural varianti151T → S in strain: cv. Alc-0. 1
Natural varianti170S → C in strain: cv. Ita-0. 1
Natural varianti329Q → K in strain: cv. Cle-1, cv. Cyr, cv. Ge-0, cv. Jea, cv. Kn-0, cv. Lz-0, cv. Mar1-2, cv. Mol-1, cv. Par-2, cv. Pon, cv. Rom-1, cv. St-0, cv. Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2. 1
Natural varianti445Q → R in strain: cv. Mar-2. 1
Natural varianti457A → C in strain: cv. Cvi-0. 1
Natural varianti479P → A in strain: cv. Cle-1, cv. Cyr, cv. Ge-0, cv. Jea, cv. Kn-0, cv. Lz-0, cv. Mar1-2, cv. Mol-1, cv. Par-2, cv. Pon, cv. Rom-1, cv. St-0, cv. Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2. 1
Natural varianti512 – 520Missing in strain: cv. Cle-1, cv. Cyr, cv. Ge-0, cv. Jea, cv. Kn-0, cv. Lz-0, cv. Mar1-2, cv. Mol-1, cv. Par-2, cv. Pon, cv. Rom-1, cv. St-0, cv. Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2. 9
Natural varianti518V → G in strain: cv. Bur-0. 1
Natural varianti536V → F in strain: cv. Cro-1, cv. Lac-1, cv. Sakata and cv. Sha. 1
Natural varianti542V → I in strain: cv. Sakata and cv. Sha. 1
Natural varianti618R → Q in strain: cv. Akita. 1
Natural varianti761P → L in strain: cv. Lac-1. 1
Natural varianti848Q → QQ in strain: cv. Cro-1, cv. Ita-0 and cv. Lac-1. 1
Natural varianti848Q → QQQ in strain: cv. Blh-1. 1
Natural varianti848Q → QQQQQ in strain: cv. Sakata and cv. Sha. 1
Natural varianti856 – 857Missing in strain: cv. Alc-0, cv. Cla-1, cv. Lac-1 and cv. Mar-2. 2
Natural varianti858R → S in strain: cv. Kn-0, cv. Lz-0, cv. Par-2 and cv. Pon. 1
Natural varianti874S → T in strain: cv. Cro-1, cv. Sakata and cv. Sha. 1
Natural varianti879N → K in strain: cv. Cro-1. 1
Natural varianti884H → R in strain: cv. Lac-1. 1
Natural varianti892A → G in strain: cv. Cle-1, cv. Cro-1, cv. Cyr, cv. Ge-0, cv. Ita-0, cv. Jea, cv. Kn-0, cv. Lac-1, cv. Lz-0, cv. Mar1-2, cv. Mol-1, cv. Par-2, cv. Pon, cv. Rom-1, cv. Sakata, cv. Sha, cv. St-0, cv. Tsu-0, cv. Vou-3, cv. Wha1 and cv. Wha2. 1
Natural varianti923N → S in strain: cv. St-0 and cv. Tsu-0. 1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
U03456 mRNA Translation: AAA19115.1
AY849995 Genomic DNA Translation: AAX51265.1
AM180092 Genomic DNA Translation: CAJ53827.1
AM180093 Genomic DNA Translation: CAJ53828.1
AM180094 Genomic DNA Translation: CAJ53829.1
AM180095 Genomic DNA Translation: CAJ53830.1
AM180096 Genomic DNA Translation: CAJ53831.1
AM180097 Genomic DNA Translation: CAJ53832.1
AM180098 Genomic DNA Translation: CAJ53833.1
AM180099 Genomic DNA Translation: CAJ53834.1
AM180100 Genomic DNA Translation: CAJ53835.1
AM180101 Genomic DNA Translation: CAJ53836.1
AM180102 Genomic DNA Translation: CAJ53837.1
AM180103 Genomic DNA Translation: CAJ53838.1
AM180104 Genomic DNA Translation: CAJ53839.1
AM180105 Genomic DNA Translation: CAJ53840.1
AM180106 Genomic DNA Translation: CAJ53841.1
AM180107 Genomic DNA Translation: CAJ53842.1
AM180108 Genomic DNA Translation: CAJ53843.1
AM180109 Genomic DNA Translation: CAJ53844.1
AM180110 Genomic DNA Translation: CAJ53845.1
AM180111 Genomic DNA Translation: CAJ53846.1
AM180112 Genomic DNA Translation: CAJ53847.1
AM180113 Genomic DNA Translation: CAJ53848.1
AM180114 Genomic DNA Translation: CAJ53849.1
AM180115 Genomic DNA Translation: CAJ53850.1
AM180116 Genomic DNA Translation: CAJ53851.1
AM180117 Genomic DNA Translation: CAJ53852.1
AM180118 Genomic DNA Translation: CAJ53853.1
AM180119 Genomic DNA Translation: CAJ53854.1
AM180120 Genomic DNA Translation: CAJ53855.1
AM180121 Genomic DNA Translation: CAJ53856.1
AM180122 Genomic DNA Translation: CAJ53857.1
AM180123 Genomic DNA Translation: CAJ53858.1
AM180124 Genomic DNA Translation: CAJ53859.1
AM180125 Genomic DNA Translation: CAJ53860.1
AM180126 Genomic DNA Translation: CAJ53861.1
AM180127 Genomic DNA Translation: CAJ53862.1
AM180128 Genomic DNA Translation: CAJ53863.1
AM180129 Genomic DNA Translation: CAJ53864.1
AM180130 Genomic DNA Translation: CAJ53865.1
AM180131 Genomic DNA Translation: CAJ53866.1
AM180132 Genomic DNA Translation: CAJ53867.1
AM180133 Genomic DNA Translation: CAJ53868.1
AM180134 Genomic DNA Translation: CAJ53869.1
AC002330 Genomic DNA Translation: AAC78261.1
AL161494 Genomic DNA Translation: CAB80749.1
CP002687 Genomic DNA Translation: AEE82192.1
CP002687 Genomic DNA Translation: AEE82193.1
AK226746 mRNA Translation: BAE98847.1
AF229402 Genomic DNA Translation: AAK00674.1

Protein sequence database of the Protein Information Resource

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PIRi
T01093

NCBI Reference Sequences

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RefSeqi
NP_001190660.1, NM_001203731.2
NP_192165.1, NM_116490.4

Genome annotation databases

Ensembl plant genome annotation project

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EnsemblPlantsi
AT4G02560.1; AT4G02560.1; AT4G02560
AT4G02560.2; AT4G02560.2; AT4G02560

Database of genes from NCBI RefSeq genomes

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GeneIDi
827904

Gramene; a comparative resource for plants

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Gramenei
AT4G02560.1; AT4G02560.1; AT4G02560
AT4G02560.2; AT4G02560.2; AT4G02560

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ath:AT4G02560

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U03456 mRNA Translation: AAA19115.1
AY849995 Genomic DNA Translation: AAX51265.1
AM180092 Genomic DNA Translation: CAJ53827.1
AM180093 Genomic DNA Translation: CAJ53828.1
AM180094 Genomic DNA Translation: CAJ53829.1
AM180095 Genomic DNA Translation: CAJ53830.1
AM180096 Genomic DNA Translation: CAJ53831.1
AM180097 Genomic DNA Translation: CAJ53832.1
AM180098 Genomic DNA Translation: CAJ53833.1
AM180099 Genomic DNA Translation: CAJ53834.1
AM180100 Genomic DNA Translation: CAJ53835.1
AM180101 Genomic DNA Translation: CAJ53836.1
AM180102 Genomic DNA Translation: CAJ53837.1
AM180103 Genomic DNA Translation: CAJ53838.1
AM180104 Genomic DNA Translation: CAJ53839.1
AM180105 Genomic DNA Translation: CAJ53840.1
AM180106 Genomic DNA Translation: CAJ53841.1
AM180107 Genomic DNA Translation: CAJ53842.1
AM180108 Genomic DNA Translation: CAJ53843.1
AM180109 Genomic DNA Translation: CAJ53844.1
AM180110 Genomic DNA Translation: CAJ53845.1
AM180111 Genomic DNA Translation: CAJ53846.1
AM180112 Genomic DNA Translation: CAJ53847.1
AM180113 Genomic DNA Translation: CAJ53848.1
AM180114 Genomic DNA Translation: CAJ53849.1
AM180115 Genomic DNA Translation: CAJ53850.1
AM180116 Genomic DNA Translation: CAJ53851.1
AM180117 Genomic DNA Translation: CAJ53852.1
AM180118 Genomic DNA Translation: CAJ53853.1
AM180119 Genomic DNA Translation: CAJ53854.1
AM180120 Genomic DNA Translation: CAJ53855.1
AM180121 Genomic DNA Translation: CAJ53856.1
AM180122 Genomic DNA Translation: CAJ53857.1
AM180123 Genomic DNA Translation: CAJ53858.1
AM180124 Genomic DNA Translation: CAJ53859.1
AM180125 Genomic DNA Translation: CAJ53860.1
AM180126 Genomic DNA Translation: CAJ53861.1
AM180127 Genomic DNA Translation: CAJ53862.1
AM180128 Genomic DNA Translation: CAJ53863.1
AM180129 Genomic DNA Translation: CAJ53864.1
AM180130 Genomic DNA Translation: CAJ53865.1
AM180131 Genomic DNA Translation: CAJ53866.1
AM180132 Genomic DNA Translation: CAJ53867.1
AM180133 Genomic DNA Translation: CAJ53868.1
AM180134 Genomic DNA Translation: CAJ53869.1
AC002330 Genomic DNA Translation: AAC78261.1
AL161494 Genomic DNA Translation: CAB80749.1
CP002687 Genomic DNA Translation: AEE82192.1
CP002687 Genomic DNA Translation: AEE82193.1
AK226746 mRNA Translation: BAE98847.1
AF229402 Genomic DNA Translation: AAK00674.1
PIRiT01093
RefSeqiNP_001190660.1, NM_001203731.2
NP_192165.1, NM_116490.4

3D structure databases

SMRiQ38796
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi13195, 7 interactors
IntActiQ38796, 2 interactors
STRINGi3702.AT4G02560.1

Proteomic databases

PaxDbiQ38796
PRIDEiQ38796
ProteomicsDBi238784

Genome annotation databases

EnsemblPlantsiAT4G02560.1; AT4G02560.1; AT4G02560
AT4G02560.2; AT4G02560.2; AT4G02560
GeneIDi827904
GrameneiAT4G02560.1; AT4G02560.1; AT4G02560
AT4G02560.2; AT4G02560.2; AT4G02560
KEGGiath:AT4G02560

Organism-specific databases

AraportiAT4G02560
TAIRilocus:2005532 AT4G02560

Phylogenomic databases

eggNOGiENOG410IMKC Eukaryota
ENOG4111YQX LUCA
HOGENOMiCLU_008897_0_0_1
InParanoidiQ38796
OMAiHAQVIEP
OrthoDBi143242at2759
PhylomeDBiQ38796

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q38796

Gene expression databases

ExpressionAtlasiQ38796 baseline and differential
GenevisibleiQ38796 AT

Family and domain databases

CDDicd00086 homeodomain, 1 hit
InterProiView protein in InterPro
IPR009057 Homeobox-like_sf
IPR001356 Homeobox_dom
IPR035441 TFIIS/LEDGF_dom_sf
SMARTiView protein in SMART
SM00389 HOX, 1 hit
SUPFAMiSSF46689 SSF46689, 1 hit
SSF47676 SSF47676, 1 hit
PROSITEiView protein in PROSITE
PS50071 HOMEOBOX_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiLUMI_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q38796
Secondary accession number(s): O22771
, Q0KG59, Q0KG64, Q0KG74, Q0KG76, Q0KG77, Q0KG78, Q0KG89, Q0KG90, Q0KG91, Q0KG92, Q0KG93, Q0KG94, Q0KG97, Q0WVK1, Q58T20, Q9C5Z9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 5, 2001
Last sequence update: February 5, 2008
Last modified: June 17, 2020
This is version 161 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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