Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

tRNA pseudouridine synthase D

Gene

truD

Organism
Sulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) (Thiomicrospira denitrificans (strain ATCC 33889 / DSM 1251))
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs.UniRule annotation

Catalytic activityi

tRNA uridine(13) = tRNA pseudouridine(13).UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei76NucleophileUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomerase
Biological processtRNA processing

Enzyme and pathway databases

BioCyciSDEN326298:G1G5D-1089-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase DUniRule annotation (EC:5.4.99.27UniRule annotation)
Alternative name(s):
tRNA pseudouridine(13) synthaseUniRule annotation
tRNA pseudouridylate synthase DUniRule annotation
tRNA-uridine isomerase DUniRule annotation
Gene namesi
Name:truDUniRule annotation
Ordered Locus Names:Suden_1032
OrganismiSulfurimonas denitrificans (strain ATCC 33889 / DSM 1251) (Thiomicrospira denitrificans (strain ATCC 33889 / DSM 1251))
Taxonomic identifieri326298 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaEpsilonproteobacteriaCampylobacteralesHelicobacteraceaeSulfurimonas
Proteomesi
  • UP000002714 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002301551 – 357tRNA pseudouridine synthase DAdd BLAST357

Interactioni

Protein-protein interaction databases

STRINGi326298.Suden_1032

Structurei

3D structure databases

ProteinModelPortaliQ30RS1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini151 – 331TRUDUniRule annotationAdd BLAST181

Sequence similaritiesi

Belongs to the pseudouridine synthase TruD family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4106NZV Bacteria
COG0585 LUCA
HOGENOMiHOG000224848
KOiK06176
OMAiGNRFFMR
OrthoDBiPOG091H03KK

Family and domain databases

HAMAPiMF_01082 TruD, 1 hit
InterProiView protein in InterPro
IPR020103 PsdUridine_synth_cat_dom_sf
IPR001656 PsdUridine_synth_TruD
IPR011760 PsdUridine_synth_TruD_insert
PANTHERiPTHR13326 PTHR13326, 1 hit
PfamiView protein in Pfam
PF01142 TruD, 2 hits
SUPFAMiSSF55120 SSF55120, 2 hits
TIGRFAMsiTIGR00094 tRNA_TruD_broad, 1 hit
PROSITEiView protein in PROSITE
PS50984 TRUD, 1 hit

Sequencei

Sequence statusi: Complete.

Q30RS1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDRFYSLSHS SIDFHFKQTP RDFVVEEVPL YEFCGEGEHL ILFVRKKGIS
60 70 80 90 100
TLELVSMIAK YLGIKNKEIG YAGLKDKHAM TKQYISLHKK YEEKMDTFEH
110 120 130 140 150
EDVKILSKTY HNNKIRIGHL NGNKFYIKLK KVNPTSALKI DEALKNIASF
160 170 180 190 200
GMPNYFGYQR FGTDGNNHID GELIAKGEKK ERNPKVRQLL ISAYQSHLFN
210 220 230 240 250
LWLSRRLEIN SLIQNFDVKE LEPLLNIPQD ELLKMKSQKH PFKLISGDIM
260 270 280 290 300
EHYPYGRLFE FIGEAHDFDR FNAKDISVTG LLCGKKAKHS TGLSREIEKD
310 320 330 340 350
FDDEINEDGA RRYAWVFPKD IDGRYKDEEA QYELNFYLPK GCYATVLIEE

IAKRKIV
Length:357
Mass (Da):41,648
Last modified:December 6, 2005 - v1
Checksum:i09E0B7E98006DBEE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000153 Genomic DNA Translation: ABB44310.1
RefSeqiWP_011372662.1, NC_007575.1

Genome annotation databases

EnsemblBacteriaiABB44310; ABB44310; Suden_1032
KEGGitdn:Suden_1032

Similar proteinsi

Entry informationi

Entry nameiTRUD_SULDN
AccessioniPrimary (citable) accession number: Q30RS1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 4, 2006
Last sequence update: December 6, 2005
Last modified: September 12, 2018
This is version 72 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again