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UniProtKB - Q2SUD8 (Q2SUD8_BURTA)

Entry version 77 (25 May 2022)
Sequence version 1 (24 Jan 2006)
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Protein
Submitted name:

ImcF-related family

Gene

BTH_I2954

Organism
Burkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CIP 106301 / E264)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
ImcF-related familyImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:BTH_I2954Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBurkholderia thailandensis (strain ATCC 700388 / DSM 13276 / CIP 106301 / E264)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri271848 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Betaproteobacteria › Burkholderiales › Burkholderiaceae › Burkholderia › pseudomallei group ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001930 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome I

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei12 – 30HelicalSequence analysisAdd BLAST19
Transmembranei36 – 57HelicalSequence analysisAdd BLAST22
Transmembranei440 – 461HelicalSequence analysisAdd BLAST22

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini190 – 442IcmF-related_NInterPro annotationAdd BLAST253
Domaini494 – 862IcmF-relatedInterPro annotationAdd BLAST369
Domaini1131 – 1234IcmF_CInterPro annotationAdd BLAST104

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni566 – 616DisorderedSequence analysisAdd BLAST51
Regioni1235 – 1301DisorderedSequence analysisAdd BLAST67

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili473 – 500Sequence analysisAdd BLAST28

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi599 – 616Polar residuesSequence analysisAdd BLAST18
Compositional biasi1235 – 1256Polar residuesSequence analysisAdd BLAST22

Keywords - Domaini

Coiled coilSequence analysis, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		CLU_003353_4_0_4

Identification of Orthologs from Complete Genome Data

More...OMAi		NFVREFM

Database of Orthologous Groups

More...OrthoDBi		393769at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR009612, IcmF-related
IPR025743, IcmF-related_N_dom
IPR010623, IcmF_C
IPR027417, P-loop_NTPase
IPR017731, TssM1-like

Pfam protein domain database

More...Pfami		View protein in Pfam
PF06761, IcmF-related, 1 hit
PF14331, IcmF-related_N, 1 hit
PF06744, IcmF_C, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF52540, SSF52540, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR03348, VI_IcmF, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q2SUD8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MQRFLNVLTH PRTLTIVGFA ALAAVLFIAA DALQIGFVWA AGALAVALAL 
        60         70         80         90        100
WLATKLWRRS RVRRANRQLG DMLEQQAETG KVSAAVAEPA KRADLDVLRT 
       110        120        130        140        150
RLADSVKTIK TSKIGQVSGG SALYELPWYI VIGNPAAGKS SAVINSGLQF 
       160        170        180        190        200
PFADKNSAVI HGIGGTRNCD WFFTTEGILL DTAGRYSVHE EDRSEWLGFL 
       210        220        230        240        250
DLLKRYRPKA PINGIIVTAS IAELTGNRPE FAINLAKNLR QRVQELTEKL 
       260        270        280        290        300
EVFAPVYVMF TKADLITGFT EFFSSSDRQE YDRVWGATLP YEPDEKRDVV 
       310        320        330        340        350
ALFDQRFEEL YDGLKEISVA QLSISRGNKL SPGQLSFPLE FSTIKPALRS 
       360        370        380        390        400
FLATLFEDNP FQYKPIFRGF YFTSALQEGE TNSAAAQRIA NRFGLDSQSL 
       410        420        430        440        450
PKPHSAFSKN GFFLRDLFSK VIFADRQTVR QFASPTKTRV RYATFFGFVA 
       460        470        480        490        500
ALALALGGWT WSTIGNQQLV SNVQADLDNV TRLQQNRNDL QSRLQAMDIL 
       510        520        530        540        550
EDRIEQLEQF RRDKPLSVSL GLYQGNRLEQ HLLTEYYNGV RQILLAPVSD 
       560        570        580        590        600
NLASFLKDVN AHPDQLAPMT RAPESGATPA GPMPVSANPA AAPGTAPSPA 
       610        620        630        640        650
VAPNQQQGGL YNDASPTNVE DAYNALKTYL MLSDKRHVEQ AHLTDQVARF 
       660        670        680        690        700
WRGWLETNRG NMPRDEMIKS AERMITFYLS RVSDNDWPMI EANLALVDQT 
       710        720        730        740        750
RENLRRVVRG MPARQRVYEE IKARASTRFA PMTIARIVGE GNTGLVAGSY 
       760        770        780        790        800
AIPGTFTREA WFQYVQPAIR DAATKELQAK DWVLNTASAD DLTLEGSPEQ 
       810        820        830        840        850
IQKTLVAMYK TEYAQHWQKF MQGIAVQGFG NFTQAVDAMN KLGDPQDSPI 
       860        870        880        890        900
RKVLETAYDQ TSWDNPSLAN ATIRKAQTGV VNWVKQWFTR QPGGQIAANV 
       910        920        930        940        950
DINGNPADVP MGPIGQEFVG LGRIVATHDG TSMLKGYMDT LSKVRTRFNV 
       960        970        980        990       1000
IKNQGDPGPG ARQLMQQTLD GNGSELADSL KFVDEQMLTG LTDSQRKSLR 
      1010       1020       1030       1040       1050
PLLVRPLMQA FAVVIQPASV EVNKVWNAQV YQPFQNSLAN KYPFAAGAKV 
      1060       1070       1080       1090       1100
EAGAGEIAQV FGPDGSIAKF VGATLGPLAV RRGDTLSART WGDMGLALTP 
      1110       1120       1130       1140       1150
DFTSGFARWV APLAGGAATS AAGSSEPQTV FQVLPQPSSG TTEYTIAIDG 
      1160       1170       1180       1190       1200
QQLRYRNTPP QWTNFVWPNP QGSPGATLSA TTFDGRTVQL VNEPGRYGLE 
      1210       1220       1230       1240       1250
KLINSAQRKR RADGTFDLTW TQGSVSVSVT MRIISTSQPT GGGGDQPQQQ 
      1260       1270       1280       1290       1300
SLRGLRLPSS VADASAGGAA NATAQPGSGG TAAAPQAAVA TASASNAQGA 

Q
Length:1,301
Mass (Da):142,135
Last modified:January 24, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDCC1CE3F5BC78B82
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
CP000086 Genomic DNA Translation: ABC39090.1

NCBI Reference Sequences

More...RefSeqi		WP_011402549.1, NZ_CP008786.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		ABC39090; ABC39090; BTH_I2954

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		bte:BTH_I2954

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000086 Genomic DNA Translation: ABC39090.1
RefSeqiWP_011402549.1, NZ_CP008786.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiABC39090; ABC39090; BTH_I2954
KEGGibte:BTH_I2954

Phylogenomic databases

HOGENOMiCLU_003353_4_0_4
OMAiNFVREFM
OrthoDBi393769at2

Family and domain databases

InterProiView protein in InterPro
IPR009612, IcmF-related
IPR025743, IcmF-related_N_dom
IPR010623, IcmF_C
IPR027417, P-loop_NTPase
IPR017731, TssM1-like
PfamiView protein in Pfam
PF06761, IcmF-related, 1 hit
PF14331, IcmF-related_N, 1 hit
PF06744, IcmF_C, 1 hit
SUPFAMiSSF52540, SSF52540, 1 hit
TIGRFAMsiTIGR03348, VI_IcmF, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ2SUD8_BURTA
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q2SUD8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: May 25, 2022
This is version 77 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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