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Protein
Submitted name:

Xanthorhodopsin

Gene

SRU_1500

Organism
Salinibacter ruber (strain DSM 13855 / M31)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionPhotoreceptor protein, Receptor, Retinal proteinUniRule annotation
Biological process
LigandChromophore

Enzyme and pathway databases

BioCyciSRUB309807:G1G5H-1497-MONOMER

Protein family/group databases

TCDBi3.E.1.6.2 the ion-translocating microbial rhodopsin (mr) family

Names & Taxonomyi

Protein namesi
Submitted name:
XanthorhodopsinImported
Gene namesi
Ordered Locus Names:SRU_1500Imported
OrganismiSalinibacter ruber (strain DSM 13855 / M31)Imported
Taxonomic identifieri309807 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidetes Order II. Incertae sedisRhodothermaceaeSalinibacter
Proteomesi
  • UP000008674 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei15 – 35HelicalSequence analysisAdd BLAST21
Transmembranei47 – 64HelicalSequence analysisAdd BLAST18
Transmembranei97 – 115HelicalSequence analysisAdd BLAST19
Transmembranei122 – 140HelicalSequence analysisAdd BLAST19
Transmembranei152 – 171HelicalSequence analysisAdd BLAST20
Transmembranei192 – 213HelicalSequence analysisAdd BLAST22
Transmembranei225 – 248HelicalSequence analysisAdd BLAST24

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

PTM / Processingi

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei240N6-(retinylidene)lysineUniRule annotation1

Post-translational modificationi

Contains one covalently linked retinal chromophore.UniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi309807.SRU_1500

Structurei

3D structure databases

ProteinModelPortaliQ2S2F8
SMRiQ2S2F8
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ2S2F8

Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105CSB Bacteria
ENOG4111G9N LUCA
HOGENOMiHOG000287563
OMAiVGWAIYP
OrthoDBiPOG091H0QF2

Family and domain databases

CDDicd15242 7tm_Proteorhodopsin, 1 hit
InterProiView protein in InterPro
IPR001425 Arc/bac/fun_rhodopsins
IPR017402 Proteorhodopsin
PANTHERiPTHR28286 PTHR28286, 1 hit
PfamiView protein in Pfam
PF01036 Bac_rhodopsin, 1 hit
PIRSFiPIRSF038142 Rhodopsin_bac_prd, 1 hit
PRINTSiPR00251 BACTRLOPSIN
SMARTiView protein in SMART
SM01021 Bac_rhodopsin, 1 hit

Sequencei

Sequence statusi: Complete.

Q2S2F8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLQELPTLTP GQYSLVFNMF SFTVATMTAS FVFFVLARNN VAPKYRISMM
60 70 80 90 100
VSALVVFIAG YHYFRITSSW EAAYALQNGM YQPTGELFND AYRYVDWLLT
110 120 130 140 150
VPLLTVELVL VMGLPKNERG PLAAKLGFLA ALMIVLGYPG EVSENAALFG
160 170 180 190 200
TRGLWGFLST IPFVWILYIL FTQLGDTIQR QSSRVSTLLG NARLLLLATW
210 220 230 240 250
GFYPIAYMIP MAFPEAFPSN TPGTIVALQV GYTIADVLAK AGYGVLIYNI
260 270
AKAKSEEEGF NVSEMVEPAT ASA
Length:273
Mass (Da):30,089
Last modified:January 24, 2006 - v1
Checksum:iDFA5CF3DE0A15207
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000159 Genomic DNA Translation: ABC44767.1
RefSeqiWP_011404249.1, NC_007677.1
YP_445623.1, NC_007677.1

Genome annotation databases

EnsemblBacteriaiABC44767; ABC44767; SRU_1500
GeneIDi3853028
KEGGisru:SRU_1500
PATRICifig|309807.25.peg.1556

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000159 Genomic DNA Translation: ABC44767.1
RefSeqiWP_011404249.1, NC_007677.1
YP_445623.1, NC_007677.1

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
3DDLX-ray1.90A/B1-273[»]
ProteinModelPortaliQ2S2F8
SMRiQ2S2F8
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi309807.SRU_1500

Protein family/group databases

TCDBi3.E.1.6.2 the ion-translocating microbial rhodopsin (mr) family

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABC44767; ABC44767; SRU_1500
GeneIDi3853028
KEGGisru:SRU_1500
PATRICifig|309807.25.peg.1556

Phylogenomic databases

eggNOGiENOG4105CSB Bacteria
ENOG4111G9N LUCA
HOGENOMiHOG000287563
OMAiVGWAIYP
OrthoDBiPOG091H0QF2

Enzyme and pathway databases

BioCyciSRUB309807:G1G5H-1497-MONOMER

Miscellaneous databases

EvolutionaryTraceiQ2S2F8

Family and domain databases

CDDicd15242 7tm_Proteorhodopsin, 1 hit
InterProiView protein in InterPro
IPR001425 Arc/bac/fun_rhodopsins
IPR017402 Proteorhodopsin
PANTHERiPTHR28286 PTHR28286, 1 hit
PfamiView protein in Pfam
PF01036 Bac_rhodopsin, 1 hit
PIRSFiPIRSF038142 Rhodopsin_bac_prd, 1 hit
PRINTSiPR00251 BACTRLOPSIN
SMARTiView protein in SMART
SM01021 Bac_rhodopsin, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ2S2F8_SALRD
AccessioniPrimary (citable) accession number: Q2S2F8
Entry historyiIntegrated into UniProtKB/TrEMBL: January 24, 2006
Last sequence update: January 24, 2006
Last modified: October 10, 2018
This is version 84 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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