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UniProtKB - Q2QNS6 (CSLD4_ORYSJ)

Entry version 86 (16 Oct 2019)
Sequence version 1 (24 Jan 2006)
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Protein

Cellulose synthase-like protein D4

Gene

CSLD4

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Thought to be a Golgi-localized beta-glycan synthase that polymerize the backbones of noncellulosic polysaccharides (hemicelluloses) of plant cell wall.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei452Sequence analysis1
Active sitei905Sequence analysis1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionGlycosyltransferase, Transferase
Biological processCell wall biogenesis/degradation

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes for plant species

More...PlantReactomei		R-OSA-1119314 Cellulose biosynthesis
R-OSA-9627657 Regulation of leaf development

Protein family/group databases

Carbohydrate-Active enZymes

More...CAZyi		GT2 Glycosyltransferase Family 2

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Cellulose synthase-like protein D4 (EC:2.4.1.-)
Alternative name(s):
OsCslD4
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:CSLD4
Ordered Locus Names:Os12g0555600, LOC_Os12g36890
ORF Names:OsJ_035046
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiOryza sativa subsp. japonica (Rice)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri39947 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Oryza › Oryza sativa
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000059680 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 12

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular_location_section">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei321 – 341HelicalSequence analysisAdd BLAST21
Transmembranei352 – 372HelicalSequence analysisAdd BLAST21
Transmembranei988 – 1008HelicalSequence analysisAdd BLAST21
Transmembranei1014 – 1034HelicalSequence analysisAdd BLAST21
Transmembranei1060 – 1080HelicalSequence analysisAdd BLAST21
Transmembranei1114 – 1134HelicalSequence analysisAdd BLAST21
Transmembranei1147 – 1167HelicalSequence analysisAdd BLAST21
Transmembranei1177 – 1197HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Golgi apparatus, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003193951 – 1215Cellulose synthase-like protein D4Add BLAST1215

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...PaxDbi		Q2QNS6

PRoteomics IDEntifications database

More...PRIDEi		Q2QNS6

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Genevisible search portal to normalized and curated expression data from Genevestigator

More...Genevisiblei		Q2QNS6 OS

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...STRINGi		4530.OS12T0555600-01

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q2QNS6

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the glycosyltransferase 2 family. Plant cellulose synthase-like D subfamily.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...eggNOGi		ENOG410IEH4 Eukaryota
COG1215 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...HOGENOMi		HOG000241941

InParanoid: Eukaryotic Ortholog Groups

More...InParanoidi		Q2QNS6

KEGG Orthology (KO)

More...KOi		K00770

Identification of Orthologs from Complete Genome Data

More...OMAi		ATEHRGW

Database of Orthologous Groups

More...OrthoDBi		679241at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		3.90.550.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR005150 Cellulose_synth
IPR029044 Nucleotide-diphossugar_trans

Pfam protein domain database

More...Pfami		View protein in Pfam
PF03552 Cellulose_synt, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF53448 SSF53448, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q2QNS6-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSRRLSLPAG APVTVAVSPV RSPGGDAVVR RGSGLTSPVP RHSLGSSTAT 
        60         70         80         90        100
LQVSPVRRSG GSRYLGASRD GGADESAEFV HYTVHIPPTP DRATASVASE 
       110        120        130        140        150
AEAAAEAEEV HRPQRSYISG TIFTGGLNCA TRGHVLNFSG EGGATAASRA 
       160        170        180        190        200
AASGNMSCKM RGCDMPAFLN GGRPPCDCGF MICKECYAEC AAGNCPGCKE 
       210        220        230        240        250
AFSAGSDTDE SDSVTDDDDD EAVSSSEERD QLPLTSMARK FSVVHSMKVP 
       260        270        280        290        300
GAAANGNGKP AEFDHARWLF ETKGTYGYGN ALWPKDGHAH SGAGFVAADE 
       310        320        330        340        350
PPNFGARCRR PLTRKTSVSQ AILSPYRLLI AIRLVALGFF LAWRIRHPNP 
       360        370        380        390        400
EAVWLWAMSV ACEVWFAFSW LLDSLPKLCP VHRAADLAVL AERFESPTAR 
       410        420        430        440        450
NPKGRSDLPG IDVFVTSADP EKEPPLVTAN TILSILAADY PVEKLACYLS 
       460        470        480        490        500
DDGGALLSFE ALAETASFAR TWVPFCRKHG VEPRCPEAYF GQKRDFLKNK 
       510        520        530        540        550
VRVDFVRERR KVKREYDEFK VRVNSLPEAI RRRSDAYNAG EELRARRRQQ 
       560        570        580        590        600
EEAAAAAAAG NGELGAAAVE TAAVKATWMS DGSHWPGTWT CPAADHARGD 
       610        620        630        640        650
HAGIIQAMLA PPTSEPVMGG EAAECGGLID TTGVDVRLPM LVYVSREKRP 
       660        670        680        690        700
GYDHNKKAGA MNALVRTSAI MSNGPFILNL DCDHYVHNSS ALREGMCFML 
       710        720        730        740        750
DRGGDRVCFV QFPQRFEGVD PSDRYANHNL VFFDVSMRAM DGLQGPMYVG 
       760        770        780        790        800
TGCVFRRTAL YGFSPPRATE HHGWLGRRKI KLFLTKKKSM GKKTDRAEDD 
       810        820        830        840        850
TEMMLPPIED DDGGADIEAS AMLPKRFGGS ATFVASIPVA EYQGRLLQDT 
       860        870        880        890        900
PGCHHGRPAG ALAVPREPLD AATVAEAIGV ISCFYEEKTE WGRRIGWIYG 
       910        920        930        940        950
SVTEDVVTGY RMHNRGWRSV YCVTPRRDAF RGTAPINLTD RLHQVLRWAT 
       960        970        980        990       1000
GSVEIFFSRN NALFASPRMK LLQRVAYFNA GMYPFTSVFL LAYCLLPAVS 
      1010       1020       1030       1040       1050
LFSGKFIVQR LSATFLAFLL VITLTLCLLA LLEIKWSGIT LHEWWRNEQF 
      1060       1070       1080       1090       1100
WVIGGTSAHP AAVLQGLLKV IAGVDISFTL TSKPGNGGGD GGVGGEGNDD 
      1110       1120       1130       1140       1150
EAFAELYEVR WSYLMVPPVT IMMVNAVAIA VAAARTLYSE FPQWSKLLGG 
      1160       1170       1180       1190       1200
AFFSFWVLCH LYPFAKGLLG RRGRVPTIVF VWSGLISMII SLLWVYINPP 
      1210 
AGARERIGGG GFSFP
Length:1,215
Mass (Da):132,161
Last modified:January 24, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i464FA97879091C7B
GO

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAF30018 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence EAZ20837 differs from that shown. Reason: Erroneous gene model prediction.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti777 – 780RRKI → DAWV in AAL38529 (PubMed:11842136).Curated4

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
DP000011 Genomic DNA Translation: ABA99552.1
AP008218 Genomic DNA Translation: BAF30018.1 Sequence problems.
AP014968 Genomic DNA Translation: BAT17602.1
CM000149 Genomic DNA Translation: EAZ20837.1 Sequence problems.
AF435644 mRNA Translation: AAL38529.1

NCBI Reference Sequences

More...RefSeqi		XP_015620379.1, XM_015764893.1

Genome annotation databases

Ensembl plant genome annotation project

More...EnsemblPlantsi		Os12t0555600-01; Os12t0555600-01; Os12g0555600

Database of genes from NCBI RefSeq genomes

More...GeneIDi		107276048

Gramene; a comparative resource for plants

More...Gramenei		Os12t0555600-01; Os12t0555600-01; Os12g0555600

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		osa:107276048

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DP000011 Genomic DNA Translation: ABA99552.1
AP008218 Genomic DNA Translation: BAF30018.1 Sequence problems.
AP014968 Genomic DNA Translation: BAT17602.1
CM000149 Genomic DNA Translation: EAZ20837.1 Sequence problems.
AF435644 mRNA Translation: AAL38529.1
RefSeqiXP_015620379.1, XM_015764893.1

3D structure databases

SMRiQ2QNS6
ModBaseiSearch...

Protein-protein interaction databases

STRINGi4530.OS12T0555600-01

Protein family/group databases

CAZyiGT2 Glycosyltransferase Family 2

Proteomic databases

PaxDbiQ2QNS6
PRIDEiQ2QNS6

Genome annotation databases

EnsemblPlantsiOs12t0555600-01; Os12t0555600-01; Os12g0555600
GeneIDi107276048
GrameneiOs12t0555600-01; Os12t0555600-01; Os12g0555600
KEGGiosa:107276048

Phylogenomic databases

eggNOGiENOG410IEH4 Eukaryota
COG1215 LUCA
HOGENOMiHOG000241941
InParanoidiQ2QNS6
KOiK00770
OMAiATEHRGW
OrthoDBi679241at2759

Enzyme and pathway databases

PlantReactomeiR-OSA-1119314 Cellulose biosynthesis
R-OSA-9627657 Regulation of leaf development

Gene expression databases

GenevisibleiQ2QNS6 OS

Family and domain databases

Gene3Di3.90.550.10, 1 hit
InterProiView protein in InterPro
IPR005150 Cellulose_synth
IPR029044 Nucleotide-diphossugar_trans
PfamiView protein in Pfam
PF03552 Cellulose_synt, 1 hit
SUPFAMiSSF53448 SSF53448, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCSLD4_ORYSJ
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q2QNS6
Secondary accession number(s): A0A0N7KU71
, A3CIC4, Q0IMP7, Q8W1N5
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: January 24, 2006
Last modified: October 16, 2019
This is version 86 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Oryza sativa (rice)
    Index of Oryza sativa entries and their corresponding gene designations
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