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Protein

tRNA pseudouridine synthase D

Gene

truD

Organism
Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-13 in transfer RNAs.UniRule annotation

Catalytic activityi

tRNA uridine(13) = tRNA pseudouridine(13).UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei80NucleophileUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomerase
Biological processtRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase DUniRule annotation (EC:5.4.99.27UniRule annotation)
Alternative name(s):
tRNA pseudouridine(13) synthaseUniRule annotation
tRNA pseudouridylate synthase DUniRule annotation
tRNA-uridine isomerase DUniRule annotation
Gene namesi
Name:truDUniRule annotation
Ordered Locus Names:XOO2810
OrganismiXanthomonas oryzae pv. oryzae (strain MAFF 311018)
Taxonomic identifieri342109 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaXanthomonadalesXanthomonadaceaeXanthomonas

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002301581 – 369tRNA pseudouridine synthase DAdd BLAST369

Proteomic databases

PRIDEiQ2P1L2

Structurei

3D structure databases

ProteinModelPortaliQ2P1L2
SMRiQ2P1L2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini156 – 318TRUDUniRule annotationAdd BLAST163

Sequence similaritiesi

Belongs to the pseudouridine synthase TruD family.UniRule annotation

Phylogenomic databases

KOiK06176
OMAiGNRFFMR
OrthoDBiPOG091H03KK

Family and domain databases

HAMAPiMF_01082 TruD, 1 hit
InterProiView protein in InterPro
IPR020103 PsdUridine_synth_cat_dom_sf
IPR001656 PsdUridine_synth_TruD
IPR020119 PsdUridine_synth_TruD_CS
IPR011760 PsdUridine_synth_TruD_insert
PANTHERiPTHR13326 PTHR13326, 2 hits
PfamiView protein in Pfam
PF01142 TruD, 2 hits
SUPFAMiSSF55120 SSF55120, 1 hit
PROSITEiView protein in PROSITE
PS50984 TRUD, 1 hit
PS01268 UPF0024, 1 hit

Sequencei

Sequence statusi: Complete.

Q2P1L2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSETSLLPRA HGAAVLSAAM RSTPDDFQVD ELPAFEPSGE GEHLLLTVCK
60 70 80 90 100
RGQNTAYIAK KLAHWAGIAE MGVGYAGLKD RHAVTTQRFS VHLPKRIAPD
110 120 130 140 150
IAALDDAQMQ VIDSTWHNRK LQRGALHGNG FVLTLRQVHG ERDAVEERLQ
160 170 180 190 200
AIAARGIPNW FGEQRFGRDG GNVAAALVMF GYVQAADGTL APAPTSRRRL
210 220 230 240 250
RNDQRSMLLS AARSALFNRV LTARVEQDSW DSALEGEAWM LDGSRSVFGP
260 270 280 290 300
EPWSDALAER LACFDIHPSG PLWGAGALRS TDQAAAVEQG ALSDPQSEAL
310 320 330 340 350
RQGLEAAGLK QERRALRLRP QGLDYRWLEA QTLQLEFALP PGCYATAVLW
360
ELGEVTDAGR FDAGVRSDE
Length:369
Mass (Da):40,254
Last modified:February 7, 2006 - v1
Checksum:i18C7B016FC01D61A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008229 Genomic DNA Translation: BAE69565.1
RefSeqiWP_011259525.1, NC_007705.1

Genome annotation databases

EnsemblBacteriaiBAE69565; BAE69565; BAE69565
GeneIDi34179108
KEGGixom:XOO2810

Similar proteinsi

Entry informationi

Entry nameiTRUD_XANOM
AccessioniPrimary (citable) accession number: Q2P1L2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 4, 2006
Last sequence update: February 7, 2006
Last modified: May 23, 2018
This is version 69 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

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