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Protein

Protein SREK1IP1

Gene

srek1ip1

Organism
Xenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Possible splicing regulator involved in the control of cellular survival.By similarity

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri13 – 30CCHC-typePROSITE-ProRule annotationAdd BLAST18

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processmRNA processing, mRNA splicing
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Protein SREK1IP1
Gene namesi
Name:srek1ip1
Synonyms:sfrs12ip1
ORF Names:TNeu060i09.1
OrganismiXenopus tropicalis (Western clawed frog) (Silurana tropicalis)
Taxonomic identifieri8364 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusSilurana
Proteomesi
  • UP000008143 Componenti: Unassembled WGS sequence

Organism-specific databases

XenbaseiXB-GENE-6454409 srek1ip1

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003119261 – 155Protein SREK1IP1Add BLAST155

Proteomic databases

PaxDbiQ28EE8

Expressioni

Gene expression databases

BgeeiENSXETG00000000461 Expressed in 12 organ(s), highest expression level in embryo
ExpressionAtlasiQ28EE8 baseline

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi66 – 138Lys-richAdd BLAST73
Compositional biasi139 – 154Ser-richAdd BLAST16

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri13 – 30CCHC-typePROSITE-ProRule annotationAdd BLAST18

Keywords - Domaini

Zinc-finger

Phylogenomic databases

eggNOGiKOG2985 Eukaryota
ENOG41124J3 LUCA
GeneTreeiENSGT00510000047710
InParanoidiQ28EE8
OMAiKSKRGKH
TreeFamiTF318225

Family and domain databases

InterProiView protein in InterPro
IPR001878 Znf_CCHC
PROSITEiView protein in PROSITE
PS50158 ZF_CCHC, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 3 potential isoforms that are computationally mapped.Show allAlign All

Q28EE8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAVPGVNKDN IRAGCKKCGY PGHLTFECRN FLRVDPQRDI VLDVSSTSTE
60 70 80 90 100
DSEDESEEVA RAPADKKNVT DTGKKKLKRK KEKKLKKHRK RLHSSSESDD
110 120 130 140 150
NSKAKKRKSQ KKEKRVKHKA KKGKQHKKDK RKEKRERKSS SSSSSSSSSQ

SSSSD
Length:155
Mass (Da):17,571
Last modified:April 4, 2006 - v1
Checksum:i0606402AC56BFC9B
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F6Y1N1F6Y1N1_XENTR
Protein SREK1IP1
srek1ip1
155Annotation score:
F6Z5J5F6Z5J5_XENTR
Protein SREK1IP1
srek1ip1
83Annotation score:
F7CQB4F7CQB4_XENTR
Protein SREK1IP1
srek1ip1
128Annotation score:

Sequence cautioni

The sequence AAI35676 differs from that shown. Reason: Frameshift at position 107.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR848286 mRNA Translation: CAJ82692.1
BC135675 mRNA Translation: AAI35676.1 Frameshift.
RefSeqiNP_001015999.1, NM_001015999.2
UniGeneiStr.64789

Genome annotation databases

EnsembliENSXETT00000062714; ENSXETP00000060502; ENSXETG00000000461
GeneIDi548753
KEGGixtr:548753

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CR848286 mRNA Translation: CAJ82692.1
BC135675 mRNA Translation: AAI35676.1 Frameshift.
RefSeqiNP_001015999.1, NM_001015999.2
UniGeneiStr.64789

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PaxDbiQ28EE8

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSXETT00000062714; ENSXETP00000060502; ENSXETG00000000461
GeneIDi548753
KEGGixtr:548753

Organism-specific databases

CTDi285672
XenbaseiXB-GENE-6454409 srek1ip1

Phylogenomic databases

eggNOGiKOG2985 Eukaryota
ENOG41124J3 LUCA
GeneTreeiENSGT00510000047710
InParanoidiQ28EE8
OMAiKSKRGKH
TreeFamiTF318225

Gene expression databases

BgeeiENSXETG00000000461 Expressed in 12 organ(s), highest expression level in embryo
ExpressionAtlasiQ28EE8 baseline

Family and domain databases

InterProiView protein in InterPro
IPR001878 Znf_CCHC
PROSITEiView protein in PROSITE
PS50158 ZF_CCHC, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiSR1IP_XENTR
AccessioniPrimary (citable) accession number: Q28EE8
Secondary accession number(s): A4QNH3
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 4, 2007
Last sequence update: April 4, 2006
Last modified: September 12, 2018
This is version 57 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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