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Protein

60S ribosomal protein L13a

Gene

rpl-16

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L13a
Gene namesi
Name:rpl-16
ORF Names:M01F1.2
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiM01F1.2 ; CE01030 ; WBGene00004428 ; rpl-16

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001337781 – 20260S ribosomal protein L13aAdd BLAST202

Proteomic databases

EPDiQ27389
PaxDbiQ27389
PeptideAtlasiQ27389
PRIDEiQ27389

Expressioni

Gene expression databases

BgeeiWBGene00004428

Interactioni

Protein-protein interaction databases

BioGridi40696, 3 interactors
DIPiDIP-25636N
STRINGi6239.M01F1.2.2

Structurei

3D structure databases

ProteinModelPortaliQ27389
SMRiQ27389
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3204 Eukaryota
COG0102 LUCA
GeneTreeiENSGT00390000010799
HOGENOMiHOG000225289
InParanoidiQ27389
KOiK02872
OMAiKHNREMK
OrthoDBiEOG091G0PUZ
PhylomeDBiQ27389

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR023563 Ribosomal_L13_CS
IPR005755 Ribosomal_L13_euk/arc
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PTHR11545:SF3 PTHR11545:SF3, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01077 L13_A_E, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

Q27389-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGLSNRAIII DGKNHLLGRL ASIVAKKLLQ GDKVVVLRAE EIVISGNFHR
60 70 80 90 100
SKLKYMSFLR KRCNINPARG AFHYRAPGKI FWRTVRGMLP HKTNRGNEAL
110 120 130 140 150
KNLRAYEGVP AKYQKTKSLH APSASRFRLQ PRRKFCVVGR LSHEVGWQFQ
160 170 180 190 200
DVVAKLEAKR KVKGAAYFEQ KKKMDKLAVQ AKKNAAPKIA QYQKIIEALG

YN
Length:202
Mass (Da):22,994
Last modified:November 1, 1996 - v1
Checksum:i08683D310767DCCC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U31528 mRNA Translation: AAA74904.1
Z46381 Genomic DNA Translation: CAA86515.1
PIRiT23654
RefSeqiNP_497721.1, NM_065320.7
UniGeneiCel.23339

Genome annotation databases

EnsemblMetazoaiM01F1.2.1; M01F1.2.1; WBGene00004428
M01F1.2.2; M01F1.2.2; WBGene00004428
GeneIDi175455
KEGGicel:CELE_M01F1.2
UCSCiM01F1.2.2 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRL13A_CAEEL
AccessioniPrimary (citable) accession number: Q27389
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: May 23, 2018
This is version 120 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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