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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Desulfitobacterium hafniense (strain Y51)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:DSY0727
OrganismiDesulfitobacterium hafniense (strain Y51)
Taxonomic identifieri138119 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesPeptococcaceaeDesulfitobacterium
Proteomesi
  • UP000001946 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002617191 – 14350S ribosomal protein L13Add BLAST143

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi138119.DSY0727

Structurei

3D structure databases

ProteinModelPortaliQ24ZM6
SMRiQ24ZM6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5 Bacteria
COG0102 LUCA
HOGENOMiHOG000225286
KOiK02871
OrthoDBiPOG091H013T

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR005823 Ribosomal_L13_bac-type
IPR023563 Ribosomal_L13_CS
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01066 rplM_bact, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

Q24ZM6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSTFFAKANA VERKWYVIDA AGLPLGRLAT EAARILRGKH KPTFTPNVDT
60 70 80 90 100
GDHVIIINAE KVVLTGNKLD QKMYRRHSGY PGGLKETPYR KLMQNMPERA
110 120 130 140
VEHAVKGMLP HNKLGAQMYT KLKVYRDENH PHQAQQPEAW TIQ
Length:143
Mass (Da):16,274
Last modified:November 28, 2006 - v2
Checksum:i7E3C40DD6501A8EA
GO

Sequence cautioni

The sequence BAE82516 differs from that shown. Reason: Erroneous initiation.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008230 Genomic DNA Translation: BAE82516.1 Different initiation.
RefSeqiWP_011459272.1, NC_007907.1

Genome annotation databases

EnsemblBacteriaiBAE82516; BAE82516; DSY0727
KEGGidsy:DSY0727

Similar proteinsi

Entry informationi

Entry nameiRL13_DESHY
AccessioniPrimary (citable) accession number: Q24ZM6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: November 28, 2006
Last modified: October 25, 2017
This is version 73 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

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