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UniProtKB - Q24535 (SRF_DROME)
Protein
Serum response factor homolog
Gene
bs
Organism
Drosophila melanogaster (Fruit fly)
Status
Functioni
Required for the formation of intervein tissue of the wing. Acts in a dosage-dependent manner to suppress wing vein formation and promote development of intervein cells. Might play a role in the proper formation and maintenance of the trachea.
2 PublicationsGO - Molecular functioni
- DNA-binding transcription factor activity, RNA polymerase II-specific Source: GO_Central
- DNA-binding transcription factor binding Source: FlyBase
- protein dimerization activity Source: InterPro
- RNA polymerase II cis-regulatory region sequence-specific DNA binding Source: GO_Central
GO - Biological processi
- apposition of dorsal and ventral imaginal disc-derived wing surfaces Source: FlyBase
- branching involved in open tracheal system development Source: FlyBase
- cell differentiation Source: UniProtKB
- imaginal disc-derived wing morphogenesis Source: UniProtKB
- imaginal disc-derived wing vein morphogenesis Source: FlyBase
- instar larval development Source: UniProtKB
- open tracheal system development Source: FlyBase
- positive regulation of transcription by RNA polymerase II Source: FlyBase
- pupal development Source: UniProtKB
- regulation of transcription by RNA polymerase II Source: GO_Central
- short-term memory Source: FlyBase
- sleep Source: FlyBase
- terminal branching, open tracheal system Source: FlyBase
- wing disc development Source: UniProtKB
Keywordsi
Molecular function | Activator, Developmental protein, DNA-binding |
Biological process | Transcription, Transcription regulation |
Enzyme and pathway databases
Reactomei | R-DME-5663220, RHO GTPases Activate Formins |
SignaLinki | Q24535 |
Names & Taxonomyi
Protein namesi | Recommended name: Serum response factor homologShort name: dSRF Alternative name(s): Protein blistered |
Gene namesi | Name:bs Synonyms:Serf ORF Names:CG3411 |
Organismi | Drosophila melanogaster (Fruit fly) |
Taxonomic identifieri | 7227 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Ecdysozoa › Arthropoda › Hexapoda › Insecta › Pterygota › Neoptera › Endopterygota › Diptera › Brachycera › Muscomorpha › Ephydroidea › Drosophilidae › Drosophila › Sophophora › |
Proteomesi |
|
Organism-specific databases
FlyBasei | FBgn0004101, bs |
VEuPathDBi | VectorBase:FBgn0004101 |
Subcellular locationi
Nucleus
- Nucleus PROSITE-ProRule annotation
Nucleus
- nucleus Source: FlyBase
Keywords - Cellular componenti
NucleusPTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000199426 | 1 – 449 | Serum response factor homologAdd BLAST | 449 |
Amino acid modifications
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Modified residuei | 156 | Phosphoserine1 Publication | 1 |
Keywords - PTMi
PhosphoproteinProteomic databases
PaxDbi | Q24535 |
PTM databases
iPTMneti | Q24535 |
Expressioni
Tissue specificityi
After germ band retraction, high levels of zygotic expression are observed in a distinct subset of peripheral tracheal cells distributed throughout the embryo and low levels in somatic muscle. Expressed in the future intervein tissue of the wing imaginal disk from the third instar larvae until eclosion of the adult fly (at protein level).2 Publications
Developmental stagei
Expressed both maternally and zygotically.1 Publication
Gene expression databases
Bgeei | FBgn0004101, Expressed in egg chamber and 47 other tissues |
ExpressionAtlasi | Q24535, baseline and differential |
Genevisiblei | Q24535, DM |
Interactioni
GO - Molecular functioni
- DNA-binding transcription factor binding Source: FlyBase
- protein dimerization activity Source: InterPro
Protein-protein interaction databases
BioGRIDi | 63464, 36 interactors |
IntActi | Q24535, 1 interactor |
STRINGi | 7227.FBpp0072178 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 167 – 225 | MADS-boxPROSITE-ProRule annotationAdd BLAST | 59 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 23 – 166 | DisorderedSequence analysisAdd BLAST | 144 | |
Regioni | 270 – 360 | DisorderedSequence analysisAdd BLAST | 91 | |
Regioni | 418 – 449 | DisorderedSequence analysisAdd BLAST | 32 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 70 – 112 | Polar residuesSequence analysisAdd BLAST | 43 | |
Compositional biasi | 271 – 286 | Basic and acidic residuesSequence analysisAdd BLAST | 16 | |
Compositional biasi | 318 – 358 | Polar residuesSequence analysisAdd BLAST | 41 | |
Compositional biasi | 418 – 433 | Polar residuesSequence analysisAdd BLAST | 16 |
Phylogenomic databases
eggNOGi | KOG0015, Eukaryota |
HOGENOMi | CLU_045186_0_0_1 |
InParanoidi | Q24535 |
OMAi | ANIPPKM |
PhylomeDBi | Q24535 |
Family and domain databases
CDDi | cd00266, MADS_SRF_like, 1 hit |
Gene3Di | 3.40.1810.10, 1 hit |
InterProi | View protein in InterPro IPR033897, MADS_SRF-like IPR002100, TF_MADSbox IPR036879, TF_MADSbox_sf |
Pfami | View protein in Pfam PF00319, SRF-TF, 1 hit |
PRINTSi | PR00404, MADSDOMAIN |
SMARTi | View protein in SMART SM00432, MADS, 1 hit |
SUPFAMi | SSF55455, SSF55455, 1 hit |
PROSITEi | View protein in PROSITE PS00350, MADS_BOX_1, 1 hit PS50066, MADS_BOX_2, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 2 potential isoforms that are computationally mapped.Show allAlign All
Q24535-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MDPTRGDSRY NLNYSMSSIG LSLADPADMY GNPALGAGRP PSGGLLQNMG
60 70 80 90 100
GVPPMQRPNP AAGAPPAPQC QTLHSPQHAS QQQQQQQQQQ QQHQQQQQQQ
110 120 130 140 150
QQHPQQQRGL KRSGSDCYED HHRSSGGLTL QGLDNVASGA VDDSVDNYNP
160 170 180 190 200
LPNKKSPPAN GKKTKGRVKI KMEYIDNKLR RYTTFSKRKT GIMKKAYELS
210 220 230 240 250
TLTGTQVMLL VASETGHVYT FATRKLQPMI TSEAGKQLIQ TCLNSPDPPS
260 270 280 290 300
VGGGDQRMSA TGFEETELSY NIADEDSKDD RSPTSSGNES DDSSDVEMPA
310 320 330 340 350
EAAEVATKLP ASKTEVSAPP AASCSAATAS SGHKTMPALN YQTDTNSGPS
360 370 380 390 400
TSTAAGGGGS ADSKYVYSAA SIANIPQKML RQLIQSGHLQ VHAEEDGNQY
410 420 430 440
VTIPLSSTAA NLIKSNKLTA SGSGASGSGT PVKNDASADK PLTIKQEFD
Computationally mapped potential isoform sequencesi
There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basketA0A0B4LGL8 | A0A0B4LGL8_DROME | Blistered, isoform C | bs ba, BS, Bs, D-SRF, Dmel\CG3411 | 449 | Annotation score: | ||
B7YZQ0 | B7YZQ0_DROME | Blistered, isoform B | bs ba, BS, Bs, D-SRF, Dmel\CG3411 | 355 | Annotation score: |
Experimental Info
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Sequence conflicti | 17 | S → R in CAA54670 (PubMed:7600954).Curated | 1 | |
Sequence conflicti | 312 | S → SS in CAA54670 (PubMed:7600954).Curated | 1 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X77532 mRNA Translation: CAA54670.1 AE013599 Genomic DNA Translation: AAF47195.1 AY095071 mRNA Translation: AAM11399.1 |
PIRi | S42825 |
RefSeqi | NP_001286837.1, NM_001299908.1 NP_726438.1, NM_166667.3 |
Genome annotation databases
EnsemblMetazoai | FBtr0072271; FBpp0072178; FBgn0004101 FBtr0343314; FBpp0309973; FBgn0004101 |
GeneIDi | 37890 |
KEGGi | dme:Dmel_CG3411 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | X77532 mRNA Translation: CAA54670.1 AE013599 Genomic DNA Translation: AAF47195.1 AY095071 mRNA Translation: AAM11399.1 |
PIRi | S42825 |
RefSeqi | NP_001286837.1, NM_001299908.1 NP_726438.1, NM_166667.3 |
3D structure databases
SMRi | Q24535 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 63464, 36 interactors |
IntActi | Q24535, 1 interactor |
STRINGi | 7227.FBpp0072178 |
PTM databases
iPTMneti | Q24535 |
Proteomic databases
PaxDbi | Q24535 |
Protocols and materials databases
DNASUi | 37890 |
Genome annotation databases
EnsemblMetazoai | FBtr0072271; FBpp0072178; FBgn0004101 FBtr0343314; FBpp0309973; FBgn0004101 |
GeneIDi | 37890 |
KEGGi | dme:Dmel_CG3411 |
Organism-specific databases
CTDi | 37890 |
FlyBasei | FBgn0004101, bs |
VEuPathDBi | VectorBase:FBgn0004101 |
Phylogenomic databases
eggNOGi | KOG0015, Eukaryota |
HOGENOMi | CLU_045186_0_0_1 |
InParanoidi | Q24535 |
OMAi | ANIPPKM |
PhylomeDBi | Q24535 |
Enzyme and pathway databases
Reactomei | R-DME-5663220, RHO GTPases Activate Formins |
SignaLinki | Q24535 |
Miscellaneous databases
BioGRID-ORCSi | 37890, 0 hits in 1 CRISPR screen |
GenomeRNAii | 37890 |
PROi | PR:Q24535 |
Gene expression databases
Bgeei | FBgn0004101, Expressed in egg chamber and 47 other tissues |
ExpressionAtlasi | Q24535, baseline and differential |
Genevisiblei | Q24535, DM |
Family and domain databases
CDDi | cd00266, MADS_SRF_like, 1 hit |
Gene3Di | 3.40.1810.10, 1 hit |
InterProi | View protein in InterPro IPR033897, MADS_SRF-like IPR002100, TF_MADSbox IPR036879, TF_MADSbox_sf |
Pfami | View protein in Pfam PF00319, SRF-TF, 1 hit |
PRINTSi | PR00404, MADSDOMAIN |
SMARTi | View protein in SMART SM00432, MADS, 1 hit |
SUPFAMi | SSF55455, SSF55455, 1 hit |
PROSITEi | View protein in PROSITE PS00350, MADS_BOX_1, 1 hit PS50066, MADS_BOX_2, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | SRF_DROME | |
Accessioni | Q24535Primary (citable) accession number: Q24535 Secondary accession number(s): Q9W182 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | July 15, 1998 |
Last sequence update: | July 19, 2005 | |
Last modified: | February 23, 2022 | |
This is version 164 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Drosophila annotation project |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Drosophila
Drosophila: entries, gene names and cross-references to FlyBase