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Protein
Submitted name:

COLlagen

Gene

col-147

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
COLlagenImported
Gene namesi
Name:col-147Imported
ORF Names:CELE_T06E4.4Imported, T06E4.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiT06E4.4 ; CE06370 ; WBGene00000720 ; col-147

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei6 – 28HelicalSequence analysisAdd BLAST23

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

PaxDbiQ22256
PeptideAtlasiQ22256

Expressioni

Gene expression databases

BgeeiWBGene00000720 Expressed in 2 organ(s), highest expression level in multi-cellular organism

Interactioni

Protein-protein interaction databases

STRINGi6239.T06E4.4

Structurei

3D structure databases

ProteinModelPortaliQ22256
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 56Col_cuticle_NInterPro annotationAdd BLAST53

Keywords - Domaini

CollagenImported, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG410XNMM LUCA
GeneTreeiENSGT00910000144430
HOGENOMiHOG000085656
InParanoidiQ22256
OMAiFRRRHAK
OrthoDBiEOG091G0WI9

Family and domain databases

InterProiView protein in InterPro
IPR002486 Col_cuticle_N
IPR008160 Collagen
PfamiView protein in Pfam
PF01484 Col_cuticle_N, 1 hit
PF01391 Collagen, 1 hit
SMARTiView protein in SMART
SM01088 Col_cuticle_N, 1 hit

Sequencei

Sequence statusi: Complete.

Q22256-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MVQTLVTIAS IGSGVAVVAC LFTVGYIFND INSFHDEVID TMTEFKFNEQ
60 70 80 90 100
QAWNSMMKPT DVFGRIKRGI NKRGAQCNCG AQSNGCPAGP PGPPGQPGAQ
110 120 130 140 150
GEAGHAGEAG KPGANGVTIG LTGGNGPCIT CPAGAPGPAG APGAPGPQGP
160 170 180 190 200
SGAPGQDAVG GGPGPAGPQG PAGDAGAPGQ AGAPGHPGAP GQGGQRSRGT
210 220 230 240 250
PGPSGAPGPQ GPAGGPGQPG QSGGAGAPGP AGAPGAPGGP GNAGTPGTPG
260 270 280 290
APGNAGAPGG DAAYCPCPAR ASAVRKHRKV FRRRHAKVSA
Length:290
Mass (Da):27,211
Last modified:November 1, 1996 - v1
Checksum:i87A7D42073BBB222
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA Translation: CAA94788.1
PIRiT24586
RefSeqiNP_505486.1, NM_073085.4
UniGeneiCel.2437

Genome annotation databases

EnsemblMetazoaiT06E4.4; T06E4.4; WBGene00000720
GeneIDi179351
KEGGicel:CELE_T06E4.4
UCSCiT06E4.4 c. elegans

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA Translation: CAA94788.1
PIRiT24586
RefSeqiNP_505486.1, NM_073085.4
UniGeneiCel.2437

3D structure databases

ProteinModelPortaliQ22256
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.T06E4.4

Proteomic databases

PaxDbiQ22256
PeptideAtlasiQ22256

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiT06E4.4; T06E4.4; WBGene00000720
GeneIDi179351
KEGGicel:CELE_T06E4.4
UCSCiT06E4.4 c. elegans

Organism-specific databases

CTDi179351
WormBaseiT06E4.4 ; CE06370 ; WBGene00000720 ; col-147

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG410XNMM LUCA
GeneTreeiENSGT00910000144430
HOGENOMiHOG000085656
InParanoidiQ22256
OMAiFRRRHAK
OrthoDBiEOG091G0WI9

Gene expression databases

BgeeiWBGene00000720 Expressed in 2 organ(s), highest expression level in multi-cellular organism

Family and domain databases

InterProiView protein in InterPro
IPR002486 Col_cuticle_N
IPR008160 Collagen
PfamiView protein in Pfam
PF01484 Col_cuticle_N, 1 hit
PF01391 Collagen, 1 hit
SMARTiView protein in SMART
SM01088 Col_cuticle_N, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ22256_CAEEL
AccessioniPrimary (citable) accession number: Q22256
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: September 12, 2018
This is version 113 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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