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Protein

Beta-xylanase

Gene

xyn10B

Organism
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-beta-D-xylosidic linkages in xylans.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei517NucleophilePROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidaseUniRule annotationImported, Hydrolase
Biological processCarbohydrate metabolism, Polysaccharide degradation, Xylan degradationImported

Enzyme and pathway databases

BioCyciSDEG203122:G1G67-3088-MONOMER

Protein family/group databases

CAZyiCBM10 Carbohydrate-Binding Module Family 10
CBM2 Carbohydrate-Binding Module Family 2
GH10 Glycoside Hydrolase Family 10

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-xylanaseUniRule annotation (EC:3.2.1.8UniRule annotation)
Gene namesi
Name:xyn10BImported
Ordered Locus Names:Sde_2934Imported
OrganismiSaccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)Imported
Taxonomic identifieri203122 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaCellvibrionalesCellvibrionaceaeSaccharophagus
Proteomesi
  • UP000001947 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 34Sequence analysisAdd BLAST34
ChainiPRO_500420023535 – 619Beta-xylanaseSequence analysisAdd BLAST585

Interactioni

Protein-protein interaction databases

STRINGi203122.Sde_2934

Structurei

3D structure databases

ProteinModelPortaliQ21GI8
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini29 – 133CBM2InterPro annotationAdd BLAST105
Domaini182 – 212CBM10InterPro annotationAdd BLAST31
Domaini298 – 616GH10InterPro annotationAdd BLAST319

Sequence similaritiesi

Belongs to the glycosyl hydrolase 10 (cellulase F) family.UniRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4106J46 Bacteria
COG3693 LUCA
HOGENOMiHOG000066328
KOiK01181
OMAiGADDWPL
OrthoDBiPOG091H0Y2G

Family and domain databases

Gene3Di2.30.32.30, 1 hit
2.60.40.290, 1 hit
InterProiView protein in InterPro
IPR001919 CBD2
IPR002883 CBM10/Dockerin_dom
IPR036601 CBM10_sf
IPR008965 CBM2/CBM3_carb-bd_dom_sf
IPR012291 CBM2_carb-bd_dom_sf
IPR009031 CBM_fam10
IPR001000 GH10
IPR031158 GH10_AS
IPR017853 Glycoside_hydrolase_SF
PfamiView protein in Pfam
PF02013 CBM_10, 1 hit
PF00553 CBM_2, 1 hit
PF00331 Glyco_hydro_10, 1 hit
PRINTSiPR00134 GLHYDRLASE10
SMARTiView protein in SMART
SM00637 CBD_II, 1 hit
SM01064 CBM_10, 1 hit
SM00633 Glyco_10, 1 hit
SUPFAMiSSF49384 SSF49384, 1 hit
SSF51445 SSF51445, 1 hit
SSF57615 SSF57615, 1 hit
PROSITEiView protein in PROSITE
PS51763 CBM10, 1 hit
PS51173 CBM2, 1 hit
PS00591 GH10_1, 1 hit
PS51760 GH10_2, 1 hit

Sequencei

Sequence statusi: Complete.

Q21GI8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MIKLRQSIHG ALARTVGIIS ISTGLVLAAQ TASAACEYTV TNSWGSGFTA
60 70 80 90 100
SIRITNDTGS AVNGWAVNWQ YANGNRVTNS WNATLSGNNP YSASNIGWNG
110 120 130 140 150
GIQPGQSVEF GFQGTANGAA ETPAVTGAVC ATGSSSSSSS SSSSSSSSSS
160 170 180 190 200
SSSSSSSSSS SSTSSSSSSS SSSSSGANCV EMCKWYQDAP RPLCNNQNSG
210 220 230 240 250
WGWENNQSCI GRATCESQPS NAGGVVNSCP SSSSSSSSSS SSSSSSSSSS
260 270 280 290 300
SSSSSSSTSS SSSSTSSTSS SSSSSSGSAA NLYTLADFPI GVAVTAGNES
310 320 330 340 350
RSFLSIAAKE ATVKKHFDQI TAGNIMKMSY LHPSENSYTF SQADAMVNWA
360 370 380 390 400
NSNGVSVHGH TFIWHSDYQV PNWMNNYSGN FASMMDTHVT TIADHFEGRV
410 420 430 440 450
VSWDVVNEAI DESQSSCYRN SLFYQRLGKA YIANAFRAAR AADPSVELYY
460 470 480 490 500
NDYDTEGGNA NKLNCLLQLV DDLQANNVPI DGVGFQMHVQ IDWPSTSNIA
510 520 530 540 550
AAFQAIVDRG LKVKITELDV PINNPYGSGS FPQYSTYTSQ AAALQKARYK
560 570 580 590 600
SIVKTYLTVV PAHLRGGLTV WGIWDGDSWL LDFDNRQGAD DWPLLFSGPA
610
NGPYVEKEAF YGVAEALTE
Length:619
Mass (Da):65,022
Last modified:April 18, 2006 - v1
Checksum:i7DC483C0E72749D0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000282 Genomic DNA Translation: ABD82191.1
RefSeqiWP_011469407.1, NC_007912.1

Genome annotation databases

EnsemblBacteriaiABD82191; ABD82191; Sde_2934
KEGGisde:Sde_2934

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000282 Genomic DNA Translation: ABD82191.1
RefSeqiWP_011469407.1, NC_007912.1

3D structure databases

ProteinModelPortaliQ21GI8
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi203122.Sde_2934

Protein family/group databases

CAZyiCBM10 Carbohydrate-Binding Module Family 10
CBM2 Carbohydrate-Binding Module Family 2
GH10 Glycoside Hydrolase Family 10

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABD82191; ABD82191; Sde_2934
KEGGisde:Sde_2934

Phylogenomic databases

eggNOGiENOG4106J46 Bacteria
COG3693 LUCA
HOGENOMiHOG000066328
KOiK01181
OMAiGADDWPL
OrthoDBiPOG091H0Y2G

Enzyme and pathway databases

BioCyciSDEG203122:G1G67-3088-MONOMER

Family and domain databases

Gene3Di2.30.32.30, 1 hit
2.60.40.290, 1 hit
InterProiView protein in InterPro
IPR001919 CBD2
IPR002883 CBM10/Dockerin_dom
IPR036601 CBM10_sf
IPR008965 CBM2/CBM3_carb-bd_dom_sf
IPR012291 CBM2_carb-bd_dom_sf
IPR009031 CBM_fam10
IPR001000 GH10
IPR031158 GH10_AS
IPR017853 Glycoside_hydrolase_SF
PfamiView protein in Pfam
PF02013 CBM_10, 1 hit
PF00553 CBM_2, 1 hit
PF00331 Glyco_hydro_10, 1 hit
PRINTSiPR00134 GLHYDRLASE10
SMARTiView protein in SMART
SM00637 CBD_II, 1 hit
SM01064 CBM_10, 1 hit
SM00633 Glyco_10, 1 hit
SUPFAMiSSF49384 SSF49384, 1 hit
SSF51445 SSF51445, 1 hit
SSF57615 SSF57615, 1 hit
PROSITEiView protein in PROSITE
PS51763 CBM10, 1 hit
PS51173 CBM2, 1 hit
PS00591 GH10_1, 1 hit
PS51760 GH10_2, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ21GI8_SACD2
AccessioniPrimary (citable) accession number: Q21GI8
Entry historyiIntegrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: March 28, 2018
This is version 86 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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