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Protein

Endo-1,4-beta-xylanase

Gene

xyn11B

Organism
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Pathwayi: xylan degradation

This protein is involved in the pathway xylan degradation, which is part of Glycan degradation.PROSITE-ProRule annotation
View all proteins of this organism that are known to be involved in the pathway xylan degradation and in Glycan degradation.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei118NucleophilePROSITE-ProRule annotation1
Active sitei209Proton donorPROSITE-ProRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionGlycosidasePROSITE-ProRule annotationImported, Hydrolase
Biological processCarbohydrate metabolism, Polysaccharide degradation, Xylan degradationPROSITE-ProRule annotationImported

Enzyme and pathway databases

UniPathwayiUPA00114

Protein family/group databases

CAZyiCBM10 Carbohydrate-Binding Module Family 10
CBM60 Carbohydrate-Binding Module Family 60
GH11 Glycoside Hydrolase Family 11

Names & Taxonomyi

Protein namesi
Recommended name:
Endo-1,4-beta-xylanasePROSITE-ProRule annotation (EC:3.2.1.8PROSITE-ProRule annotation)
Gene namesi
Name:xyn11BImported
Ordered Locus Names:Sde_3061Imported
OrganismiSaccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024)Imported
Taxonomic identifieri203122 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaCellvibrionalesCellvibrionaceaeSaccharophagus
Proteomesi
  • UP000001947 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 32Sequence analysisAdd BLAST32
ChainiPRO_500419986533 – 767Endo-1,4-beta-xylanaseSequence analysisAdd BLAST735

Interactioni

Protein-protein interaction databases

STRINGi203122.Sde_3061

Structurei

3D structure databases

ProteinModelPortaliQ21G61
SMRiQ21G61
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini34 – 222GH11InterPro annotationAdd BLAST189
Domaini524 – 700NodB homologyInterPro annotationAdd BLAST177
Domaini732 – 761CBM10InterPro annotationAdd BLAST30

Sequence similaritiesi

Belongs to the glycosyl hydrolase 11 (cellulase G) family.PROSITE-ProRule annotation

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

eggNOGiENOG4108ZJ4 Bacteria
COG0726 LUCA
HOGENOMiHOG000066301
OMAiYSETMHC
OrthoDBiPOG091H02KS

Family and domain databases

Gene3Di2.30.32.30, 1 hit
2.60.120.180, 1 hit
InterProiView protein in InterPro
IPR002883 CBM10/Dockerin_dom
IPR036601 CBM10_sf
IPR031768 CBM60_xylan-bd
IPR009031 CBM_fam10
IPR013320 ConA-like_dom_sf
IPR013319 GH11/12
IPR018208 GH11_AS_1
IPR033119 GH11_AS_2
IPR033123 GH11_dom
IPR011330 Glyco_hydro/deAcase_b/a-brl
IPR001137 Glyco_hydro_11
IPR002509 NODB_dom
PfamiView protein in Pfam
PF16841 CBM60, 2 hits
PF02013 CBM_10, 1 hit
PF00457 Glyco_hydro_11, 1 hit
PF01522 Polysacc_deac_1, 1 hit
PRINTSiPR00911 GLHYDRLASE11
SMARTiView protein in SMART
SM01064 CBM_10, 1 hit
SUPFAMiSSF49899 SSF49899, 1 hit
SSF57615 SSF57615, 1 hit
SSF88713 SSF88713, 1 hit
PROSITEiView protein in PROSITE
PS51763 CBM10, 1 hit
PS00776 GH11_1, 1 hit
PS00777 GH11_2, 1 hit
PS51761 GH11_3, 1 hit
PS51677 NODB, 1 hit

Sequencei

Sequence statusi: Complete.

Q21G61-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKSINVCGRR LKQALAAIAT AAATLWFTPV DAQTLTSNQT GTHGGYYYSF
60 70 80 90 100
WTDSAGTVSM TLGNGGNYSS SWSNTGNWVG GKGWQTGGRK TVNYSGTFNP
110 120 130 140 150
SGNGYLTLYG WTQNPLIEYY IIESWGTYRP GESGTYYGTV NTDGGTYDIY
160 170 180 190 200
RTQRVNQPSI EGTATFYQYW SVRQQKRVGG TITTGNHFDA WASHGLNLGT
210 220 230 240 250
HNYMVMATEG YQSSGNSNIT VSEGSGSSST SSSSSSTGGP SGTNIVVRAQ
260 270 280 290 300
GVSGQEHINL IIGGNVVADW TLSTSMQDYT YTGNAAGDLQ VEYDNDASGR
310 320 330 340 350
DVELDYVYVN GEIRQAEDME YNTATYSGEC GGGSYSQTMH CSGVIGFGDT
360 370 380 390 400
SDCFSGNCNG ASSTSSSSSS SSTSSSTSSG GNNNSGITVR ARGTNGDEHI
410 420 430 440 450
NLIVGGNIVG NWTLTTSNQN YVYNGNASGD VEVQFDNDAN GRDVILDYVI
460 470 480 490 500
VNGETRQAED MEYNTATYSG SCGGGSYSET MHCSGEIGFG HTDDCFSGNC
510 520 530 540 550
TSSSGTTGSS GGTSSNNGTS SCNGYVGITF DDGPGNNTAT LINLLQQNNL
560 570 580 590 600
TPVTWFNTGQ NIAANTGQFA QQKSVGEIQN HSYTHSHMLN WSYQQVRDEL
610 620 630 640 650
ASTNQAIVNA GGATPTLFRP PYGETNSTIN QAAQDLGLRV ITWDVDSRDW
660 670 680 690 700
DGASASAIAN SANQLQNGQV ILMHDASYNN TNGAISQFAA NLRARGLCAG
710 720 730 740 750
KIDPSTGRAV APSTNTGGNT GSNTGNGGNG GMCNWYGTSI PLCQTTNDGW
760
GWENSQSCVS QNTCNSQ
Length:767
Mass (Da):80,785
Last modified:April 18, 2006 - v1
Checksum:i3647F5BAAA7E5B80
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000282 Genomic DNA Translation: ABD82318.1

Genome annotation databases

EnsemblBacteriaiABD82318; ABD82318; Sde_3061
KEGGisde:Sde_3061

Similar proteinsi

Entry informationi

Entry nameiQ21G61_SACD2
AccessioniPrimary (citable) accession number: Q21G61
Entry historyiIntegrated into UniProtKB/TrEMBL: April 18, 2006
Last sequence update: April 18, 2006
Last modified: February 28, 2018
This is version 82 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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