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Protein
Submitted name:

COLlagen

Gene

col-129

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
COLlagenImported
Gene namesi
Name:col-129Imported
ORF Names:CELE_M18.1Imported, M18.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditinaRhabditomorphaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiM18.1a ; CE06193 ; WBGene00000703 ; col-129

Subcellular locationi

PTM / Processingi

Proteomic databases

EPDiQ21556
PaxDbiQ21556

Expressioni

Gene expression databases

BgeeiWBGene00000703 Expressed in 2 organ(s), highest expression level in multi-cellular organism

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
let-756Q111844EBI-3844027,EBI-3843983

Protein-protein interaction databases

IntActiQ21556, 1 interactor
STRINGi6239.M18.1

Structurei

3D structure databases

ProteinModelPortaliQ21556
SMRiQ21556
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini6 – 58Col_cuticle_NInterPro annotationAdd BLAST53

Keywords - Domaini

CollagenImported

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG410XNMM LUCA
GeneTreeiENSGT00910000144430
HOGENOMiHOG000085656
InParanoidiQ21556
OMAiNFKDDAN
OrthoDBiEOG091G108B

Family and domain databases

InterProiView protein in InterPro
IPR002486 Col_cuticle_N
IPR008160 Collagen
PfamiView protein in Pfam
PF01484 Col_cuticle_N, 1 hit
PF01391 Collagen, 1 hit
SMARTiView protein in SMART
SM01088 Col_cuticle_N, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q21556-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSTARYLVSI AAAASTFAVL ASIVSLVYLV NDVNNYYDDV TRNIENFKDD
60 70 80 90 100
ANTVWHQMMT VVPQGGKQRQ VYESLFGRTK RQAAQCNCGA NSAASNCPAG
110 120 130 140 150
PPGPPGAPGE DGDHGLVGED GTPGADGNLG VPLSANGCIV CPAGPPGPPG
160 170 180 190 200
QPGQNGQRGS DGQPGQDAMG GGQGAPGPQG PAGDNGQPGR PGNDGRPGAP
210 220 230 240 250
GAPGTRSVGR PGTAGSPGPQ GPPGQNGNDG QPGNDGAPGQ PGQPGPDGHP
260 270 280 290 300
GQPGNAGPPG TPGAAGQPGG DAAYCPCPSR SSVVRAQAAV ARNRHVAARH
310 320 330
RSVSRRKAVA ARRSKARRVV AAKHRAVAKR HRAVQKA
Length:337
Mass (Da):33,536
Last modified:November 1, 1996 - v1
Checksum:i638C0ED0B381EA4E
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A061ADV7A0A061ADV7_CAEEL
COLlagen
col-129 CELE_M18.1, M18.1
279Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA Translation: CAA92826.1
PIRiT23794
RefSeqiNP_502297.1, NM_069896.5
UniGeneiCel.12566

Genome annotation databases

EnsemblMetazoaiM18.1a; M18.1a; WBGene00000703
GeneIDi178155
KEGGicel:CELE_M18.1
UCSCiM18.1 c. elegans

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA Translation: CAA92826.1
PIRiT23794
RefSeqiNP_502297.1, NM_069896.5
UniGeneiCel.12566

3D structure databases

ProteinModelPortaliQ21556
SMRiQ21556
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ21556, 1 interactor
STRINGi6239.M18.1

Proteomic databases

EPDiQ21556
PaxDbiQ21556

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiM18.1a; M18.1a; WBGene00000703
GeneIDi178155
KEGGicel:CELE_M18.1
UCSCiM18.1 c. elegans

Organism-specific databases

CTDi178155
WormBaseiM18.1a ; CE06193 ; WBGene00000703 ; col-129

Phylogenomic databases

eggNOGiKOG3544 Eukaryota
ENOG410XNMM LUCA
GeneTreeiENSGT00910000144430
HOGENOMiHOG000085656
InParanoidiQ21556
OMAiNFKDDAN
OrthoDBiEOG091G108B

Gene expression databases

BgeeiWBGene00000703 Expressed in 2 organ(s), highest expression level in multi-cellular organism

Family and domain databases

InterProiView protein in InterPro
IPR002486 Col_cuticle_N
IPR008160 Collagen
PfamiView protein in Pfam
PF01484 Col_cuticle_N, 1 hit
PF01391 Collagen, 1 hit
SMARTiView protein in SMART
SM01088 Col_cuticle_N, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ21556_CAEEL
AccessioniPrimary (citable) accession number: Q21556
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: November 7, 2018
This is version 120 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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