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Protein
Submitted name:

COLlagen

Gene

col-160

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
COLlagenImported
Gene namesi
Name:col-160Imported
ORF Names:CELE_F57B1.4Imported, F57B1.4Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome V

Organism-specific databases

WormBaseiF57B1.4 ; CE31962 ; WBGene00000733 ; col-160

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei20 – 42HelicalSequence analysisAdd BLAST23

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ20921
PaxDbiQ20921
PeptideAtlasiQ20921

Expressioni

Gene expression databases

BgeeiWBGene00000733 Expressed in 3 organ(s), highest expression level in multi-cellular organism

Interactioni

Protein-protein interaction databases

STRINGi6239.F57B1.4.1

Structurei

3D structure databases

ProteinModelPortaliQ20921
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini18 – 70Col_cuticle_NInterPro annotationAdd BLAST53

Keywords - Domaini

CollagenImported, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IS72 Eukaryota
ENOG410YW6Y LUCA
GeneTreeiENSGT00610000086159
HOGENOMiHOG000085656
InParanoidiQ20921
OMAiRNGSWFE
OrthoDBiEOG091G0SKV
PhylomeDBiQ20921

Family and domain databases

InterProiView protein in InterPro
IPR002486 Col_cuticle_N
IPR008160 Collagen
PfamiView protein in Pfam
PF01484 Col_cuticle_N, 1 hit
PF01391 Collagen, 2 hits
SMARTiView protein in SMART
SM01088 Col_cuticle_N, 1 hit

Sequencei

Sequence statusi: Complete.

Q20921-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSSEDPKQIA YETESLRKVA FFGIAVSTIA TLTAIVAVPM LYNYMQHVQS
60 70 80 90 100
SLQSEVEFCA HRSNGLWDEY QRFEGVSGVA GRIKRESYHR RASGPHRASK
110 120 130 140 150
VRRQSYGADA AVGGFGGSAG GSCCSCGTGA AGPAGSPGQD GAPGNDGAPG
160 170 180 190 200
APGNPGQDAS EDQTAGPDSF CFDCPAGPPG PSGAPGQKGP SGAPGAPGQS
210 220 230 240 250
GGASLPGPPG PAGPPGPSGQ PGSNGNAGAP GAPGQVVDVP GTPGPAGPPG
260 270 280 290 300
PPGPAGAPGQ PGQSGSAQPG GPGPQGDAGA PGAPGQPGQA GAPGQDGDSG
310
SEGACDHCPP PRTAPGY
Length:317
Mass (Da):30,281
Last modified:March 1, 2003 - v2
Checksum:i4E6BA587AF105A8D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA Translation: CAB01508.2
PIRiT22827
RefSeqiNP_506284.2, NM_073883.5
UniGeneiCel.24968

Genome annotation databases

EnsemblMetazoaiF57B1.4.1; F57B1.4.1; WBGene00000733
F57B1.4.2; F57B1.4.2; WBGene00000733
F57B1.4.3; F57B1.4.3; WBGene00000733
GeneIDi179804
KEGGicel:CELE_F57B1.4
UCSCiF57B1.4.1 c. elegans

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284605 Genomic DNA Translation: CAB01508.2
PIRiT22827
RefSeqiNP_506284.2, NM_073883.5
UniGeneiCel.24968

3D structure databases

ProteinModelPortaliQ20921
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi6239.F57B1.4.1

Proteomic databases

EPDiQ20921
PaxDbiQ20921
PeptideAtlasiQ20921

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiF57B1.4.1; F57B1.4.1; WBGene00000733
F57B1.4.2; F57B1.4.2; WBGene00000733
F57B1.4.3; F57B1.4.3; WBGene00000733
GeneIDi179804
KEGGicel:CELE_F57B1.4
UCSCiF57B1.4.1 c. elegans

Organism-specific databases

CTDi179804
WormBaseiF57B1.4 ; CE31962 ; WBGene00000733 ; col-160

Phylogenomic databases

eggNOGiENOG410IS72 Eukaryota
ENOG410YW6Y LUCA
GeneTreeiENSGT00610000086159
HOGENOMiHOG000085656
InParanoidiQ20921
OMAiRNGSWFE
OrthoDBiEOG091G0SKV
PhylomeDBiQ20921

Gene expression databases

BgeeiWBGene00000733 Expressed in 3 organ(s), highest expression level in multi-cellular organism

Family and domain databases

InterProiView protein in InterPro
IPR002486 Col_cuticle_N
IPR008160 Collagen
PfamiView protein in Pfam
PF01484 Col_cuticle_N, 1 hit
PF01391 Collagen, 2 hits
SMARTiView protein in SMART
SM01088 Col_cuticle_N, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ20921_CAEEL
AccessioniPrimary (citable) accession number: Q20921
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: March 1, 2003
Last modified: September 12, 2018
This is version 106 of the entry and version 2 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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